Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq34025 102 8e-17 seq2805 91.5 1e-13 seq2801 91.5 1e-13 seq56145 89.7 5e-13 seq56144 89.7 5e-13 seq56143 86.0 6e-12 seq48430 84.2 2e-11 >seq34025 Length=456 Score = 102 bits (112), Expect = 8e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 ||||| || | ||| | || |||||||| || |||||||||||| || || || Sbjct 347 CGCAACACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAATCGGCCAAAGTTCTGCCA 288 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 |||||||| ||||| |||||| |||||| | |||||||| || || || || || ||| Sbjct 287 TCTTCGAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCCTCCTTG 228 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || |||||| || | | || | ||||| | |||||| || | || | Sbjct 227 TCTTGTATTTTTGCCTTCACGTTATCAATGGTGTCTGAACTTTCTACCTCTAAGGTAATG 168 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 ||||| |||||||| || || ||||| || |||||| || Sbjct 167 GTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATACCT 129 >seq2805 Length=580 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 ||||| || | ||| | || |||||||| || |||||||||||| || || || Sbjct 471 CGCAACACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAATCGGCCAAAGTTCTGCCA 412 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 |||||||| ||||| |||||| |||| || | || |||||||| || || ||||| ||| Sbjct 411 TCTTCGAGCTGTTTGCCAGCAAAGATGAGCCTCTGTTGATCGGGCGGGATCCCTTCCTTG 352 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||| || || | | || | || || | || ||||| | ||| | Sbjct 351 TCTTGAATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGTGATG 292 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||||| || | || || ||||| |||||||| Sbjct 291 GTCTTGCCAGTGAGGGTCTTAACGAAAATTTGCAT 257 >seq2801 Length=469 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || ||||| || || ||||||||||| | |||| ||||| | |||| Sbjct 275 TGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGCAAGGGTGCGACCATCTTCCAATTGT 216 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || |||||| |||| || | ||||||||| ||||| || ||||| || || ||||| Sbjct 215 TTCCCAGCAAAGATAAGCCTTTGCTGATCAGGAGGAATACCTTCCTTATCTTGGATTTTA 156 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 ||| | | || | || || | || || |||| ||| | || ||||||||| Sbjct 155 GATTTCACGTTGTCTATGGTATCAGAACTCTCCACCTCAAGAGTGATAGTTTTGCCGGTC 96 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 |||||||| || || |||||||| Sbjct 95 AATGTTTTCACAAAGATTTGCAT 73 >seq56145 Length=1576 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | || | ||| ||||| | ||||| ||||| || || || ||||| Sbjct 752 CCTCCACGCAGGCGAAGAACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATCCGCA 811 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || ||| ||| || ||||| || || ||| |||||| || || ||||| ||||| Sbjct 812 AGAGTTCTCCCGTCCTCCAGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGGA 871 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| || || || | | || | ||||||| || ||| || Sbjct 872 ATTCCTTCTTTGTCCTGGATCTTCGCCTTCACGTTGTCGATTGTGTCCGAGGATTCAACC 931 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || ||||| | ||||| ||||| |||||||| Sbjct 932 TCCAGTGTGATGGTTTTTCCGGTTAGGGTTTTCACGAAGATTTGCAT 978 Score = 82.4 bits (90), Expect = 8e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTG 143040 |||| ||||||||| || || || || ||||| | |||| || | ||||| ||||| Sbjct 548 TGAAGTGTAGATTCCTTCTGAATATTATAATCAGCAAGAGTGCGTCCA-TCTTCAAGTTG 606 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 |||||||||| |||| ||||| || ||||| || ||||| ||||| || || ||| || Sbjct 607 TTTACCAGCAAAGATAAGACGCTGTTGATCAGGTGGTATCCCTTCCTTATCCTGAATCTT 666 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 ||| | | || | || |||| || || || | ||| | ||||| || || Sbjct 667 GGCTTTCACATTATCAATAGTATCCGAACTCTCCACCTCCAAAGTAATTGTCTTACCCGT 726 Query 143161 CAATGTTTTTACGAATATTTGCAT 143184 || || || || || || ||||| Sbjct 727 TAAAGTCTTGACAAAAATCTGCAT 750 >seq56144 Length=1637 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | || | ||| ||||| | ||||| ||||| || || || ||||| Sbjct 752 CCTCCACGCAGGCGAAGAACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATCCGCA 811 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || ||| ||| || ||||| || || ||| |||||| || || ||||| ||||| Sbjct 812 AGAGTTCTCCCGTCCTCCAGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGGA 871 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| || || || | | || | ||||||| || ||| || Sbjct 872 ATTCCTTCTTTGTCCTGGATCTTCGCCTTCACGTTGTCGATTGTGTCCGAGGATTCAACC 931 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || ||||| | ||||| ||||| |||||||| Sbjct 932 TCCAGTGTGATGGTTTTTCCGGTTAGGGTTTTCACGAAGATTTGCAT 978 Score = 82.4 bits (90), Expect = 8e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTG 143040 |||| ||||||||| || || || || ||||| | |||| || | ||||| ||||| Sbjct 548 TGAAGTGTAGATTCCTTCTGAATATTATAATCAGCAAGAGTGCGTCCA-TCTTCAAGTTG 606 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 |||||||||| |||| ||||| || ||||| || ||||| ||||| || || ||| || Sbjct 607 TTTACCAGCAAAGATAAGACGCTGTTGATCAGGTGGTATCCCTTCCTTATCCTGAATCTT 666 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 ||| | | || | || |||| || || || | ||| | ||||| || || Sbjct 667 GGCTTTCACATTATCAATAGTATCCGAACTCTCCACCTCCAAAGTAATTGTCTTACCCGT 726 Query 143161 CAATGTTTTTACGAATATTTGCAT 143184 || || || || || || ||||| Sbjct 727 TAAAGTCTTGACAAAAATCTGCAT 750 >seq56143 Length=1408 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | || | ||| ||||| | ||||| ||||| || || || ||||| Sbjct 752 CCTCCACGCAGGCGAAGAACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATCCGCA 811 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || ||| ||| || ||||| || || ||| |||||| || || ||||| ||||| Sbjct 812 AGAGTTCTCCCGTCCTCCAGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGGA 871 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| || || || | | || | ||||||| || ||| || Sbjct 872 ATTCCTTCTTTGTCCTGGATCTTCGCCTTCACGTTGTCGATTGTGTCCGAGGATTCAACC 931 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || || | ||||| ||||| |||||||| Sbjct 932 TCCAGTGTGATGGTTTTTCCAGTTAGCGTTTTGACGAAGATTTGCAT 978 Score = 82.4 bits (90), Expect = 8e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTG 143040 |||| ||||||||| || || || || ||||| | |||| || | ||||| ||||| Sbjct 548 TGAAGTGTAGATTCCTTCTGAATATTATAATCAGCAAGAGTGCGTCCA-TCTTCAAGTTG 606 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 |||||||||| |||| ||||| || ||||| || ||||| ||||| || || ||| || Sbjct 607 TTTACCAGCAAAGATAAGACGCTGTTGATCAGGTGGTATCCCTTCCTTATCCTGAATCTT 666 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 ||| | | || | || |||| || || || | ||| | ||||| || || Sbjct 667 GGCTTTCACATTATCAATAGTATCCGAACTCTCCACCTCCAAAGTAATTGTCTTACCCGT 726 Query 143161 CAATGTTTTTACGAATATTTGCAT 143184 || || || || || || ||||| Sbjct 727 TAAAGTCTTGACAAAAATCTGCAT 750 >seq48430 Length=787 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTT 143033 ||| | ||||| |||||||| || || || ||||||||| || |||| || | |||| Sbjct 184 AACAAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCA-TCTT 126 Query 143034 CGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 | || || ||||| || | |||| ||| |||||||| ||||| || ||||||||||| Sbjct 125 CAAGCTGCTTACCGGCGAAAATCAAACGCTGCTGATCCGGAGGGATACCTTCTTTGTC 68 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506541235148880