Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq56145 91.5 1e-13 seq56144 91.5 1e-13 seq56143 91.5 1e-13 seq2801 91.5 1e-13 seq2800 86.0 4e-12 >seq56145 Length=1576 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 || || |||||||||||||| | | || || |||| || | |||||| || ||||| Sbjct 560 TCCTTCTGAATATTATAATCAGCAAGAGTG-CGTCCATCTTCAAGTTGTTTACCAGCAAA 618 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 || | || || || || | |||| ||||| ||||| ||| || ||| || | Sbjct 619 GATAAGACGCTGTTGATCAGGTGGTATCCCTTCCTTATCCTGAATCTTGGCTTTCACATT 678 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 | ||| |||||| | |||||| || | |||||||| ||||| ||||||||||| || Sbjct 679 ATCAATAGTATCCGAACTCTCCACCTCCAAAGTAATTGTCTTACCCGTTAAAGTCTTGAC 738 Query 44110 AAATATTTGCAT 44121 ||| || ||||| Sbjct 739 AAAAATCTGCAT 750 >seq56144 Length=1637 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 || || |||||||||||||| | | || || |||| || | |||||| || ||||| Sbjct 560 TCCTTCTGAATATTATAATCAGCAAGAGTG-CGTCCATCTTCAAGTTGTTTACCAGCAAA 618 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 || | || || || || | |||| ||||| ||||| ||| || ||| || | Sbjct 619 GATAAGACGCTGTTGATCAGGTGGTATCCCTTCCTTATCCTGAATCTTGGCTTTCACATT 678 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 | ||| |||||| | |||||| || | |||||||| ||||| ||||||||||| || Sbjct 679 ATCAATAGTATCCGAACTCTCCACCTCCAAAGTAATTGTCTTACCCGTTAAAGTCTTGAC 738 Query 44110 AAATATTTGCAT 44121 ||| || ||||| Sbjct 739 AAAAATCTGCAT 750 >seq56143 Length=1408 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 || || |||||||||||||| | | || || |||| || | |||||| || ||||| Sbjct 560 TCCTTCTGAATATTATAATCAGCAAGAGTG-CGTCCATCTTCAAGTTGTTTACCAGCAAA 618 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 || | || || || || | |||| ||||| ||||| ||| || ||| || | Sbjct 619 GATAAGACGCTGTTGATCAGGTGGTATCCCTTCCTTATCCTGAATCTTGGCTTTCACATT 678 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 | ||| |||||| | |||||| || | |||||||| ||||| ||||||||||| || Sbjct 679 ATCAATAGTATCCGAACTCTCCACCTCCAAAGTAATTGTCTTACCCGTTAAAGTCTTGAC 738 Query 44110 AAATATTTGCAT 44121 ||| || ||||| Sbjct 739 AAAAATCTGCAT 750 >seq2801 Length=469 Score = 91.5 bits (100), Expect = 1e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| ||||||||||| || ||||| || | || |||||| || |||| | |||||| | Sbjct 229 CATCTTCCAATTGTTTCCCAGCAAAGATAAGCCTTTGCTGATCAGGAGGAATACCTTCCT 170 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 ||||| ||||| ||| || | | | ||||| | |||||| || | || | Sbjct 169 TATCTTGGATTTTAGATTTCACGTTGTCTATGGTATCAGAACTCTCCACCTCAAGAGTGA 110 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGTCGAGTC 44129 | ||||| ||||| || || |||||||| |||||||| | || || Sbjct 109 TAGTTTTGCCGGTCAATGTTTTCACAAAGATTTGCATCTTGAATC 65 >seq2800 Length=224 Score = 86.0 bits (94), Expect = 4e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 43967 TCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTA 44026 || || | |||||| ||||||||||| | || ||||| || |||| | |||||| || Sbjct 210 TCCTCAAGTTGTTTCCCTGCAAATATAAGCCTCTGCTGATCAGGAGGGATACCTTCCTTG 151 Query 44027 TCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATT 44086 || ||| || ||| || || ||| ||||||| ||| || || | || || Sbjct 150 TCCTGAATCTTAGCTTTCACATTATCAATGGTATCTGAACTCTCAACCTCCAAAGTGATA 91 Query 44087 GTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| || ||||||||||| ||||| |||||||| Sbjct 90 GTTTTTCCTGTTAAAGTCTTGACAAAAATTTGCAT 56 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354454785533532