Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq46009 174 1e-38 seq25475 86.0 5e-12 >seq46009 Length=1074 Score = 174 bits (192), Expect = 1e-38 Identities = 577/890 (65%), Gaps = 13/890 (1%) Strand=Plus/Minus Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 ||||||| ||||| || ||||| || | ||| ||| | ||||||||||| | |||| Sbjct 901 TTGACATCACAGATGCCTTCTGATAATCACCAACCCTTCTCTCAAAAAAGTTGGCCTTTC 842 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTAC 12962 ||| | |||||| ||||| |||| || ||||||| | || | |||| | | Sbjct 841 CTTGCAGAGAAATAAACTCCATCCAATCAAAGGGATTTTCCACTTCGTAATTTTTTGTGC 782 Query 12963 ACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCAC 13022 | || || | || | |||||||||||||| | ||||||||| |||| | | Sbjct 781 AACCCAAGGAAACCAATAGCCTGTCAGCAACAAATTTTATGTACTGGCTCATAAGCTTTG 722 Query 13023 AGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAA 13082 ||||||| || || || ||| | || || | ||| | | || || |||| Sbjct 721 AGTTCATGCCAATCAAAGCACAAGGGAGTGCATCACAGACAAACTCGGTCTCAATTTCAA 662 Query 13083 CTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTT---GATAGATGCT 13139 | |||||| || || | | | | || || || | || || | | | ||| Sbjct 661 CAGCTTCGTGTACAATAT-TATGAACCCGCTCG-TAGTCTAGCTTTCTCAGTAACAAGCT 604 Query 13140 TAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTG 13199 | | ||| || |||||||||||||| | || || |||||| ||||| || |||| Sbjct 603 GTAT-AGCATGCAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTG 545 Query 13200 AAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAAC 13259 | ||||| ||||| ||||| || |||| ||||||| ||| ||||| ||| || | Sbjct 544 AGAATGTCAGACCTGGCATTAGTCCTCTCTTTTTAAGCCAGAATATGGCACAGAAGCTTC 485 Query 13260 CCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTAT 13319 | || |||||||| |||||||| |||||| | | | ||| || || | | | Sbjct 484 CTGAGAAAAATATCCCTTCAACACATGCAAAACCAACAAGCCTCTCCGCAAATG---AAG 428 Query 13320 TTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTT 13379 | ||| | ||||| | ||||| | || || | ||| || | ||||| Sbjct 427 TGGAACTGTTAATCCAACTCAATGCCCATTCAGCCTTCCTTGCAACACAAGGAAGATTTT 368 Query 13380 CTATTGCGTTAAATAAATAAtttttttCCTTACTG--TCTAAAATATAAGTATCTATCAA 13437 | ||||| || || || | || || || |||| ||| |||||| || || | || Sbjct 367 CAATTGCATTGAACAATTTATGCTTCTC--GACTGAATCTTTAATATATGTCTCCAACAG 310 Query 13438 TAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCT 13497 || |||||||| || ||||||||||| || || ||||| || || || || || | Sbjct 309 CAAACTATACATCTCAGAATGAATATTCTCGATTGCTATCTGAAACCCGTAGAATGCCCG 250 Query 13498 AGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCC 13557 |||||| | | ||||| || ||| ||| | || || || || ||| || || Sbjct 249 AGCCTCCGGGATTTGAACGTCATTCAGAAACCTTGCAGCCAAATTCTCCAAAACGATTCC 190 Query 13558 GTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAA 13617 ||| | |||||||||||||| | ||| || || | || ||| |||||||| Sbjct 189 ATCAGATGTTGCAAAAAAAGCAAGGACGTGTGATATGAAGTGCTTCTCGGAGTCTGACAA 130 Query 13618 CTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGC 13677 || ||||| | | ||| | || | |||||| || || ||||||| ||| || Sbjct 129 GGTTGCCCAATGATGTACATCATAGGAGAGATCTACTTCTTCGGCGGTCCAGAAACTGGC 70 Query 13678 AACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAACA 13727 ||||||| || |||||| ||| | | || || ||| ||||||| Sbjct 69 TTCAGCCTTTTTGTACATCTCCCAGAGTTGTTTGTATCGAATTGGAAACA 20 >seq25475 Length=2349 Score = 86.0 bits (94), Expect = 5e-12 Identities = 297/456 (65%), Gaps = 18/456 (4%) Strand=Plus/Plus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 || ||||| || | ||| | || ||||||||||| || || || | | |||||| Sbjct 1242 TTCTGATACTCTCCAACGCGCTTCTCAAAAAAGTTGGTCTTCCCCTGAAGCGAAATCAGA 1301 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTT--ACACCCTAATTCTAGTA 12977 ||||| |||| || ||||| || ||| || | | || |||||| | || | Sbjct 1302 TCCATCCAATCAAACGGATTCGTC--ACATTATAAATCTTCCCACACCCAAGCTCCCCCA 1359 Query 12978 ACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTA 13037 |||| || ||||||||| |||| || ||| |||| ||||||| |||||| || | | Sbjct 1360 ACAACCTATCAGCAACATACTCAATATACGTACTCATCAAATCACCGTTCATCCCAACCA 1419 Query 13038 ATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTA 13097 | ||| | || || | ||| | | || || ||||| || || || | Sbjct 1420 ACGCGCAAGGAAGCGCGTCGCACACAAACTCCCTCTCGATCTCAACCGCGTCACGCACAA 1479 Query 13098 T-GTCTCTTATTACGTTCTCTA-ATGGAGGAT-----TTGATAGATGCTTAAACATCATA 13150 | |||| ||| |||| | ||| | || ||| ||| |||| || | Sbjct 1480 TCGTCTGC----ACGCGCTCTTCACTGAGTTTCTTTTTTAATA-ATGAGTAAAG--CAAA 1532 Query 13151 CATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGA 13210 || || ||||| || || | ||||| || | || |||||||||||||| |||| Sbjct 1533 CAAGCGAAATCGCAATGAAGACCTTCGTCGCGTGAAATAAGCTCGTTTGAAAAAGTTAAT 1592 Query 13211 CCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaT 13270 || ||||| | || |||||||| | ||| || || ||| || ||| ||||||||| Sbjct 1593 CCTGGCATTAAACCGCGTTTTTTGAGCCAGAAAATCGCACAGAAACTACCTGAAAAAAAT 1652 Query 13271 ATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCA 13306 || |||||||| ||||| |||| | ||| ||| Sbjct 1653 ATACCTTCAACGCAAGCAAATGCTACAATCCTCTCA 1688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430590246285918