Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq33732 96.9 3e-15 seq48696 93.3 4e-14 seq53415 89.7 4e-13 seq48430 84.2 2e-11 seq2804 84.2 2e-11 >seq33732 Length=802 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 |||||||||||| ||| ||||| || |||||||||||||| || || ||| | |||| Sbjct 460 CACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGC-AAGGGTACGCCCATCCT 402 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | || |||||||| | |||| | |||||||||||| || | | |||||||| Sbjct 401 CTAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGAGGGATCCCCTCCTTGTCTT 342 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| || ||| | | |||||||||| | | ||| || | || ||||| | Sbjct 341 GAATCTTGGACTTAACATTGTCTATGGTATCTGAACTCTCAACTTCAAGAGTGATGGTCT 282 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 | || || || || |||||||| || |||||| || Sbjct 281 TGCCAGTCAGGGTCTTCACAAAGATTTGCATCTTG 247 >seq48696 Length=1151 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTC-GTCCTCCAGCTG 48582 ||||| || |||||| || || ||||||||||| || ||| || ||| |||||||| Sbjct 507 TGAAGGGTCGACTCCTTCTGGATATTGTAATCAGC-AAGAGTCCTTCCGTCTTCCAGCTG 449 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 |||||| | | || || | |||||||||| || | | |||||| ||| || || Sbjct 448 CTTACCCGCAAAGATCAACCTCTGCTGATCCGGAGGGATTCCTTCCTTATCCTGGATCTT 389 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||| | | | || |||||||| | | ||| ||||| || |||||||| ||| Sbjct 388 AGCCTTCACGTTGTCG--ATGGTATCAGAACTCTCAACCTCGAGGGTGATGGTTTTCCCG 331 Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || ||||| |||||||| Sbjct 330 GTGAGCGTCTTAACAAAGATCTGCAT 305 >seq53415 Length=940 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/199 (71%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || || | | || || |||| |||| |||||| ||| || Sbjct 346 CTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGC-CGTCTTCCAACTGCTTCCCGGCGA 288 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--T 48651 | || | |||||||||||| || | | |||||||| || || ||||| | Sbjct 287 AGATGAGACGCTGCTGATCTGGAGGAATCCCCTCCTTGTCTTGGATCTTGGTCTTGACGT 228 Query 48652 AGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTT 48711 | || ||||| |||| |||||| ||||| ||||| || || || || || ||||| Sbjct 227 TGTCG--ATGGTGTCGGAAGACTCAACCTCGAGGGTTATCGTCTTCCCCGTTAGGGTTTT 170 Query 48712 CACAAAAATCTGCATCGTG 48730 ||| || ||||||||| || Sbjct 169 CACGAAGATCTGCATCTTG 151 >seq48430 Length=787 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || || | ||| | || | |||||| || ||||| || || |||||||| ||| Sbjct 201 CCACCACGAAGCCTGAGAACAAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCC 142 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | || || |||||||||||| || |||| ||||||||||||||| || Sbjct 141 AAGGTGCGTCCATCTTCAAGCTGCTTACCGGCGAAAATCAAACGCTGCTGATCCGGAGGG 82 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | || ||| ||||| ||| || ||||| | | ||||| ||| | ||| | Sbjct 81 ATACCTTCTTTGTCTTGAATCTTGGTCTTGACATTGTCGATGGTGTCGCTGCTCTCGACC 22 Query 48680 TCGACTGTTATGGTTTTACCG 48700 |||| || |||||||| ||| Sbjct 21 TCGAGGGTGATGGTTTTCCCG 1 >seq2804 Length=712 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| ||||| ||||| ||||| || ||||||||||||| ||| || || | |||| Sbjct 466 CACCAAATGGAGTGTAGATTCCTTCTGTATGTTGTAATCAG-CAAGGGTACGGCCATCCT 408 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | || || || ||| | |||| | ||||||||| || || | | ||||||||| Sbjct 407 CTAGTTGTTTGCCGGCAAAAATGAGACGCTGCTGGTCAGGTGGGATCCCTTCCTTGTCTT 348 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| || ||| | | |||||||||| | | ||| |||| || ||||| | Sbjct 347 GAATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGTGATGGTCT 288 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 | || ||||| || || || ||||| |||||| || Sbjct 287 TGCCAGTGAGGGTCTTAACGAAAATTTGCATCTTG 253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420867900768659