Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq63568 482 4e-131 seq34938 141 1e-28 seq51626 120 5e-22 >seq63568 Length=1222 Score = 482 bits (534), Expect = 4e-131 Identities = 675/944 (72%), Gaps = 2/944 (0%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668 |||| |||||||||||| | |||||||| | ||| | | | ||||| | ||||| Sbjct 1043 TTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATT 985 Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728 | || ||||| || || ||||| || ||||| || || || ||||| || || |||| Sbjct 984 ATCGCTTTCATTGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGA 925 Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788 || | | || || ||||| || || |||||||| || |||| |||| || ||| Sbjct 924 TCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATC 865 Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848 ||||| ||||| || || || |||||||| ||| | ||||||| ||| | ||||||||| Sbjct 864 GGTTTGCACTTTTACCCGATATGGGAAGCTGCATCCGTTGATGAATGGTTATACAATGGT 805 Query 211849 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGA 211908 |||||||| | | | | | |||||| | | || | | |||||||| | Sbjct 804 GGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGT 745 Query 211909 CAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCA 211968 ||||||||||| | ||| | |||||||| |||||||| |||||| |||||||| Sbjct 744 GAGTGGGAACTTAGTTTTCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCT 685 Query 211969 CCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCA 212028 || || |||| ||| || || ||| | | |||||| | ||||| || || ||| Sbjct 684 CCCGTCGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCA 625 Query 212029 GACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAA 212088 || ||||||||| |||| || || || || |||||||| ||| | ||||| || || || Sbjct 624 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAG 565 Query 212089 CATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCA 212148 ||||| || |||||||||||||| || ||| |||||| || ||| | ||||| || | Sbjct 564 CATAATATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 505 Query 212149 TTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGT 212208 ||||| ||||||||||||||| | || || ||| | ||| | |||||||| | Sbjct 504 CTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 445 Query 212209 TTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTT 212268 || || || | ||||||| ||||| ||||| ||||| || ||||| || || Sbjct 444 AATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTA 385 Query 212269 GCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGA 212328 ||||| || || || || || || | |||||||| ||||| |||||||| | Sbjct 384 GCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGC 325 Query 212329 AGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGT 212388 |||||| |||||||| || | |||||||| | || | ||||| ||| | | ||| Sbjct 324 TCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGGT 265 Query 212389 ATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCA 212448 ||| |||| ||||| ||||| ||||||| ||||| || |||||||| || |||||| Sbjct 264 ATCAGCACTATGGCTTTCAATTTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGT 205 Query 212449 TCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAA 212508 |||| || || ||| |||| |||| || ||||| | || ||||||||||||||| Sbjct 204 CAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAA 145 Query 212509 GTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 |||||||| ||| | ||||| || || ||||| || ||| |||| Sbjct 144 GTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGC 101 >seq34938 Length=1424 Score = 141 bits (156), Expect = 1e-28 Identities = 255/366 (70%), Gaps = 14/366 (4%) Strand=Plus/Minus Query 194581 TCGAAACCTGAGTATGTATTTCTTGCTGCTGCTAAGGTAGGTGGTATAGGTGGTAACTCT 194640 ||||| || |||| ||| || | |||||||| || || ||||| || || ||| | Sbjct 974 TCGAAGCCGGAGTTTGTGATTGTAGCTGCTGCCAAAGTTGGTGGAATTCATGCTAATAAT 915 Query 194641 ACCTATCCTGCCGATTTCAT--CTATGACAATCTGATGATTCAGACAAATGTTATTGATG 194698 ||||||||||| |||||||| | || ||| || || ||||| ||||| |||||| Sbjct 914 ACCTATCCTGCTGATTTCATTGCCAT--CAACCTCCAAATCCAGACCAATGTCATTGATT 857 Query 194699 CTGCATATCGTAATGGAGTTAAGAAACTATTGTTTCTAGGTTCATCTTGCATCTATCCTA 194758 | || ||||| || || | |||||| ||||||||| | ||||| |||||||| || |||| Sbjct 856 CGGCTTATCGCAACGGTGCTAAGAAGCTATTGTTTTTGGGTTCCTCTTGCATTTACCCTA 797 Query 194759 AGTTTCCAAAGATACCTATTACAGAGGATCAGTTACTTGCTAGTCCTTTGGAAGAATCTA 194818 | ||| || ||| || | ||||| || || | | || ||||| | | Sbjct 796 AATTTGCACCACAACCGATCTCGGAGGACGCTTTGCTCACCGGCCCCTTGGAGCCCACAA 737 Query 194819 AT-AGTGCTTATGCAATTGCAAAGATAGCAGGTATGAGGATGTGTCAAGCATATCG---T 194874 || | || ||||||||||| ||||| || || || | ||||| || || || | | Sbjct 736 ATGAATG-GTATGCAATTGCCAAGATTGCCGGGATCAAAATGTGCCAGGCTTACAGAATT 678 Query 194875 CAGCAGTA-TGGATTTAATGCAATATCATTAATGCCTACTAATCTATACGGACCTAATGA 194933 ||||| | ||| ||||||| ||| ||||| || || |||| ||||| ||||| Sbjct 677 CAGCACAAGTGG----GATGCAATTTCAGGGATGCCGACCAACTTATATGGACCAAATGA 622 Query 194934 TAATTT 194939 ||||| Sbjct 621 CAATTT 616 >seq51626 Length=1787 Score = 120 bits (132), Expect = 5e-22 Identities = 177/251 (71%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 193911 AATTATCGTGAGTCATATGGATTCCACGCTAGTTCTGGTATTCTCTTCAATCACGAATCT 193970 || || ||||| | |||||| || ||||| || || |||||||||||||| |||||| Sbjct 723 AACTACCGTGAAGCGTATGGAATCTACGCTTGTAACGGAATTCTCTTCAATCATGAATCT 782 Query 193971 CCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTACACAAGGTTTATCTAAGATCTCT 194030 || | |||| |||| || || || | |||||||| | | | | | |||| Sbjct 783 CCGCGGCGAGGAGAGAATTTCGTGACGAGGAAGATTACTCGTGCTGTTGGAAGGATCAAG 842 Query 194031 GTTGGATTACAGAAGATTCTTTATCTTGGTAATCTTAATGCTAAGAGGGATTGGGGACAC 194090 |||| | |||| | |||| ||| || || ||| | ||| ||| ||||||||| Sbjct 843 ATTGGGCTTCAGAGTAAGCTTTTTCTCGGAAACCTTCAGGCTTCGAGAGATTGGGGATTT 902 Query 194091 GCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTGCAACAGGATGAACCCGATGATTAT 194150 || |||||||| ||||| |||||||| ||| ||||||| || | || ||||||||| Sbjct 903 GCTGGTGATTATGTGGAAGCAATGTGGTTGATGCTGCAACAAGAGAAGCCTGATGATTAT 962 Query 194151 GTGATTGCTAC 194161 || |||| || Sbjct 963 GTTGTTGCGAC 973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 806801559204040