Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq17518 217 4e-51 seq17517 217 4e-51 seq22701 176 1e-38 seq22702 168 2e-36 seq46009 143 7e-29 >seq17518 Length=2997 Score = 217 bits (240), Expect = 4e-51 Identities = 574/870 (66%), Gaps = 16/870 (2%) Strand=Plus/Plus Query 363443 TTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATG 363502 |||||||| | || || |||||| ||||| | ||| || |||| || || | ||| Sbjct 757 TTGTTGAAAGGCCTCAACATATGATAATGAGGGTTTCTGTTGGGATTCACAAGCATGATA 816 Query 363503 TTGATGCCGCGATTGAAACATATAAGCT----TCTAAGTGCTCGTGTATTCACGCACGCC 363558 |||| |||| || | || ||| | | ||| || | | || |||| || || Sbjct 817 TTGAATCCGCTGTTAAGACTTATCATTTGATGTCTCAGAGATGGT----TCACTCATGCT 872 Query 363559 ACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTA 363618 | ||||| | | |||||| || |||| || || ||| || | |||||| | || Sbjct 873 TCTCCAACTCTTTTCAATGCCGGGACTCCTAGGCCTCAGTTGAGTAGTTGCTTCTTGATA 932 Query 363619 AAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATT 363678 ||||| || ||| || || || || | ||| ||| | || | || ||| | ||| Sbjct 933 TGTATGAAAGATGATAGTATTGAAGGGATTTATGATACATTGAAAGAGTGCGCTGTCATT 992 Query 363679 TCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTAC 363738 || ||| || || |||||||| || | || || | | ||| | ||| ||| Sbjct 993 AGTAAATCTGCTGGAGGGATTGGTGTTTCTGTTCATAACATAAGGGCATATGGCAGCTAC 1052 Query 363739 ATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAAT 363798 ||||| || ||| || || ||||| | |||| ||||| |||||||| | | Sbjct 1053 ATTCGTGGAACAAATGGGACGTCTAATGGTATCATTCCAATGCTGCGTGTGTTCAATGAC 1112 Query 363799 ACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTC 363858 ||||| | || || || ||||| ||||| ||| | ||||| || |||||| | || | Sbjct 1113 ACTGCCCGATATGTTGATCAGGGAGGAGGCAAGAGAAAAGGTGCTTTTGCTGTATACTTG 1172 Query 363859 GAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAG 363918 || || ||||| ||| | ||||| || | ||| | | |||| ||||| || Sbjct 1173 GAACCATGGCATGCTGATGTATTTGAATTCTTGGAGTTGAAAATAAACCACGGAAAGGAA 1232 Query 363919 GAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGC 363978 ||| |||||| || ||| | || ||||| |||||||| |||| | ||||||| | | Sbjct 1233 GAACAGCGTGCTCGAGATTTATTTTATGCCCTTTGGGTGCCTGATCTTTTTATGGAAAGA 1292 Query 363979 GT--GGAGGCA-GGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCC 364035 || |||| | ||| | |||||| || |||||||| | || || ||| | | Sbjct 1293 GTTCGGAGCAATGGTGA---TTGGTCCCTGTTTTGCCCCAATGAGGCCCCTGGTTTGGCA 1349 Query 364036 GA-TGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGC 364094 || ||| |||||||| || |||| ||| ||| |||||||| | ||||| || Sbjct 1350 GACTGT-TGGGGTGAAGAATATGAGAATCTGTACACCCAGTATGAAAGAGCTGGAAAAGC 1408 Query 364095 TCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGAC 364154 ||| ||| ||||| | || |||||||| || || | || ||||| || || Sbjct 1409 AAAGAAGGTTGTTCAAGCACAAAGTCTCTGGTTTGCAATTTTGAAGTCACAGATAGAAAC 1468 Query 364155 AGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCT 364214 |||| || || ||| | | || ||| | ||||| | || ||||||||| | || Sbjct 1469 TGGAAATCCTTACATGCTTTTTAAGGATGCTTGCAATAGGAAAAGCAACCAGCAAAATCT 1528 Query 364215 TGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGA 364274 ||| |||||| || ||||| || || ||||| ||||| ||||| ||| || Sbjct 1529 TGGCACAATTAAGTCATCAAACCTGTGCACTGAGATAATTGAGTACACAAGTCCAACAGA 1588 Query 364275 GACTGCCGTATGTAACCTTGCGTCGATCGC 364304 ||||||||| ||||||||||| || || || Sbjct 1589 GACTGCCGTGTGTAACCTTGCATCAATTGC 1618 >seq17517 Length=2996 Score = 217 bits (240), Expect = 4e-51 Identities = 574/870 (66%), Gaps = 16/870 (2%) Strand=Plus/Plus Query 363443 TTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATG 363502 |||||||| | || || |||||| ||||| | ||| || |||| || || | ||| Sbjct 756 TTGTTGAAAGGCCTCAACATATGATAATGAGGGTTTCTGTTGGGATTCACAAGCATGATA 815 Query 363503 TTGATGCCGCGATTGAAACATATAAGCT----TCTAAGTGCTCGTGTATTCACGCACGCC 363558 |||| |||| || | || ||| | | ||| || | | || |||| || || Sbjct 816 TTGAATCCGCTGTTAAGACTTATCATTTGATGTCTCAGAGATGGT----TCACTCATGCT 871 Query 363559 ACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTA 363618 | ||||| | | |||||| || |||| || || ||| || | |||||| | || Sbjct 872 TCTCCAACTCTTTTCAATGCCGGGACTCCTAGGCCTCAGTTGAGTAGTTGCTTCTTGATA 931 Query 363619 AAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATT 363678 ||||| || ||| || || || || | ||| ||| | || | || ||| | ||| Sbjct 932 TGTATGAAAGATGATAGTATTGAAGGGATTTATGATACATTGAAAGAGTGCGCTGTCATT 991 Query 363679 TCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTAC 363738 || ||| || || |||||||| || | || || | | ||| | ||| ||| Sbjct 992 AGTAAATCTGCTGGAGGGATTGGTGTTTCTGTTCATAACATAAGGGCATATGGCAGCTAC 1051 Query 363739 ATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAAT 363798 ||||| || ||| || || ||||| | |||| ||||| |||||||| | | Sbjct 1052 ATTCGTGGAACAAATGGGACGTCTAATGGTATCATTCCAATGCTGCGTGTGTTCAATGAC 1111 Query 363799 ACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTC 363858 ||||| | || || || ||||| ||||| ||| | ||||| || |||||| | || | Sbjct 1112 ACTGCCCGATATGTTGATCAGGGAGGAGGCAAGAGAAAAGGTGCTTTTGCTGTATACTTG 1171 Query 363859 GAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAG 363918 || || ||||| ||| | ||||| || | ||| | | |||| ||||| || Sbjct 1172 GAACCATGGCATGCTGATGTATTTGAATTCTTGGAGTTGAAAATAAACCACGGAAAGGAA 1231 Query 363919 GAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGC 363978 ||| |||||| || ||| | || ||||| |||||||| |||| | ||||||| | | Sbjct 1232 GAACAGCGTGCTCGAGATTTATTTTATGCCCTTTGGGTGCCTGATCTTTTTATGGAAAGA 1291 Query 363979 GT--GGAGGCA-GGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCC 364035 || |||| | ||| | |||||| || |||||||| | || || ||| | | Sbjct 1292 GTTCGGAGCAATGGTGA---TTGGTCCCTGTTTTGCCCCAATGAGGCCCCTGGTTTGGCA 1348 Query 364036 GA-TGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGC 364094 || ||| |||||||| || |||| ||| ||| |||||||| | ||||| || Sbjct 1349 GACTGT-TGGGGTGAAGAATATGAGAATCTGTACACCCAGTATGAAAGAGCTGGAAAAGC 1407 Query 364095 TCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGAC 364154 ||| ||| ||||| | || |||||||| || || | || ||||| || || Sbjct 1408 AAAGAAGGTTGTTCAAGCACAAAGTCTCTGGTTTGCAATTTTGAAGTCACAGATAGAAAC 1467 Query 364155 AGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCT 364214 |||| || || ||| | | || ||| | ||||| | || ||||||||| | || Sbjct 1468 TGGAAATCCTTACATGCTTTTTAAGGATGCTTGCAATAGGAAAAGCAACCAGCAAAATCT 1527 Query 364215 TGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGA 364274 ||| |||||| || ||||| || || ||||| ||||| ||||| ||| || Sbjct 1528 TGGCACAATTAAGTCATCAAACCTGTGCACTGAGATAATTGAGTACACAAGTCCAACAGA 1587 Query 364275 GACTGCCGTATGTAACCTTGCGTCGATCGC 364304 ||||||||| ||||||||||| || || || Sbjct 1588 GACTGCCGTGTGTAACCTTGCATCAATTGC 1617 >seq22701 Length=2303 Score = 176 bits (194), Expect = 1e-38 Identities = 384/567 (68%), Gaps = 6/567 (1%) Strand=Plus/Minus Query 111315 TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGG 111374 ||||| ||||| ||||| ||| || || |||| || |||| ||||| ||||| ||| Sbjct 1112 TTTCCGCTTCTAACAACTAAGAGAGTATTTTGGCGCGGGGTTGTTGAAGAGCTTCTTTGG 1053 Query 111375 TTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATG-TAAAAATTTGGGA 111433 ||||| | || |||||||| | || || ||| ||||| | | || ||||| Sbjct 1052 TTTATCAGTGGCTCAACAAATGCCA-TGGTGTTACAGGAAAAAGGCATTCATATATGGGA 994 Query 111434 TGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAAGAAGGTGA 111493 ||||||| ||| | || | || ||| ||||| | || | || || ||||| Sbjct 993 CGGAAATGCATCGAGAGAATACCTTGATAGCATTGGTTTGAAAGAAAGGGAGGAGGGTGA 934 Query 111494 TCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCA 111553 | ||||| ||||| || ||||| ||| | |||||||||||| | || | | |||||| Sbjct 933 CTTAGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGTGCAAAGTATACTAACATGCA 874 Query 111554 CGACTCATATGATTCACAGGGAACTGATCAA-TTACAGAATGTCATTGATCAAATTAAGA 111612 || || || ||| |||||| || ||| ||| ||| || | || ||| Sbjct 873 TGAGGACTACTCCGGCCAAGGATTTGATCAGCTTTTAGA-TGTTATTAATAAGATAAAGC 815 Query 111613 ACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAAAAA 111672 | || || | ||| ||||| || | |||||||| ||| || | || || Sbjct 814 ATAATCCCGATGATCGACGCATCATCCTCTCAGCATGGAATCCATCTGATCTTAAATTAA 755 Query 111673 TGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTCA 111731 |||| ||||||||||| || | | | ||| ||||| ||||| | ||| | | || Sbjct 754 TGGCTCTTCCACCATGCCA-CATGTTTGCACAGTTCTATGTGGCAAATGGGGAGTTATCG 696 Query 111732 TGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGT 111791 || ||||||||||| |||||||| || || || || ||||| ||||||||||||||| | Sbjct 695 TGTCAAATGTATCAACGATCTGCCGACATGGGCCTGGGTGTGCCGTTTAATATTGCATCT 636 Query 111792 TACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCATT 111851 || || || | || ||| | || |||||| || | || || ||||| || || Sbjct 635 TATGCGCTCTTGACATGCATGATTGCTCATGTTTGTGACCTTGTTCCAGGTGATTTTATC 576 Query 111852 CACGTTATCGGAGATGCGCATGTTTAC 111878 || ||||| || ||| | ||||||||| Sbjct 575 CATGTTATTGGGGATACACATGTTTAC 549 >seq22702 Length=2386 Score = 168 bits (186), Expect = 2e-36 Identities = 389/574 (68%), Gaps = 9/574 (2%) Strand=Plus/Minus Query 111315 TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGG 111374 ||||| ||||| ||||| ||| || || |||| || |||| ||||| ||||| ||| Sbjct 1195 TTTCCGCTTCTAACAACTAAGAGAGTATTTTGGCGCGGGGTTGTTGAAGAGCTTCTTTGG 1136 Query 111375 TTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATG-TAAAAATTTGGGA 111433 ||||| | || |||||||| | || || ||| ||||| | | || ||||| Sbjct 1135 TTTATCAGTGGCTCAACAAATGCCA-TGGTGTTACAGGAAAAAGGCATTCATATATGGGA 1077 Query 111434 TGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTC-GACAACGAAGAAGGTG 111492 | |||| ||| | || || || ||| ||| | ||||| || | || || |||| Sbjct 1076 CGATAATGCATCTAGGGAATTCCTTGATAGCATTGAT-TTGTCAGAGAGGGAGGAGGGTG 1018 Query 111493 ATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGC 111552 | | ||||| ||||| || ||||| ||| | ||||||||||| || | || ||||| Sbjct 1017 ACTTAGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGTGCCAGGTATACAAACATGC 958 Query 111553 ACGACTCATATGATTCACAGGGAACTGATCAA-TTACAGAATGTCATTGATCAAATTAAG 111611 | | ||| | || ||| |||||| || ||| ||| || | | || ||| Sbjct 957 ATAATGACTATACTGGCCAAGGAGTTGATCAGCTTTTAGA-TGTTATCAACAAGATAAAG 899 Query 111612 AACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAAAA 111671 | || || | | | || || ||| | ||||||||| ||| | | || Sbjct 898 CATAATCCTGATGATAGACGGATCATTCTCTCTGCATGGAATCCAGCAGATCTTAAATTG 839 Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 |||||||||||||| ||||| | | | ||| ||||| |||||| | ||| | | || Sbjct 838 ATGGCACTTCCACCCTGTCA-CATGTCTGCGCAGTTCTATGTAGCAAATGGGGAGTTATC 780 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 || |||||| ||||||||||||||||||| || || ||||| || || || |||||| Sbjct 779 GTGTCAAATGAATCAGCGATCTGCTGATATGGGCCTGGGTGTGCCATTCAACATTGCATC 720 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCAT 111850 ||| || || || || ||| | || |||||| || | || || ||||| || || Sbjct 719 TTATGCCCTCCTGACATGCATGATTGCTCATATTTGTGAACTTGTTCCAGGTGATTTTAT 660 Query 111851 TCACGTTATCGGAGATGCGCATGTTTACACAAAC 111884 || ||| | || ||||| ||||||||| ||||| Sbjct 659 CCATGTTCTTGGGGATGCACATGTTTAC-CAAAC 627 >seq46009 Length=1074 Score = 143 bits (158), Expect = 7e-29 Identities = 347/515 (67%), Gaps = 13/515 (3%) Strand=Plus/Plus Query 22441 AAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCATTCGCGGAACGTCTTATT 22500 ||||| || ||||| ||| ||||| |||| | |||||| ||||| | ||| || Sbjct 391 AAGGCTGAATGGGCATTGAGTTGGATTAACAGTTCCACTTCATTTGCGGAGAGGCTTGTT 450 Query 22501 GCATTTGC-TGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCT 22559 | ||||| |||| ||||||| || || || || ||| || ||||| || || ||||| Sbjct 451 GGTTTTGCATGTG-TTGAAGGGATATTTTTCTCAGGAAGCTTCTGTGCCATATTCTGGCT 509 Query 22560 aaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGA 22619 ||||| | | | | ||||| ||||| || || |||||||| |||| |||| || Sbjct 510 TAAAAAGAGAGGACTAATGCCAGGTCTGACATTCTCAAATGAACTAATCTCTAGAGACGA 569 Query 22620 GGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAAA-CTTC 22678 ||||||||| |||||||| || |||||||| | | | | | | | ||| || Sbjct 570 GGGTCTTCACTGTGATTTTGCTTGCATGCTATA----CAGCTTGTTACTGAGAAAGCTAG 625 Query 22679 CATATGAAACTGTACTTGATATTATTACA-AATGCAGTTGAACTTGA-ACGTCTA-TTTA 22735 || || || | | ||||| |||| | || |||||| |||| || | | ||| Sbjct 626 ACTACGAGCGGGTTCATAATATT-GTACACGAAGCTGTTGAAATTGAGAC--CGAGTTTG 682 Query 22736 TTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACATATA 22795 | || || || | || | | ||||| || || | | ||||| || | Sbjct 683 TCTGTGATGCACTCCCTTGTGCTTTGATTGGCATGAACTCAAAGCTTATGAGCCAGTACA 742 Query 22796 TTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAACGTCG 22855 | ||||||||||| || | ||||| |||| | |||| |||| |||| | || | Sbjct 743 TAAAATTTGTTGCTGACAGGCTATTGGTTTCCTTGGGTTGCACAAAAAATTACGAAGTGG 802 Query 22856 TTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAA 22915 ||||| ||||| |||||||| ||||||| || |||||||| |||| || || || | Sbjct 803 AAAATCCCTTTGATTGGATGGAGTTTATTTCTCTGCAAGGAAAGGCCAACTTTTTTGAGA 862 Query 22916 AAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 ||| |||||||| || || || ||| ||| ||| Sbjct 863 GAAGGGTTGGTGATTATCAGAAGGCATCTGTGATG 897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302106853083338