Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq48696 111 1e-19 seq56145 109 5e-19 seq56144 109 5e-19 seq56143 105 6e-18 seq48430 102 8e-17 seq33732 98.7 9e-16 seq2804 95.1 1e-14 seq34025 87.8 2e-12 >seq48696 Length=1151 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | || ||||||||| | || | |||||||||||| || || |||||||| Sbjct 533 AGCCACCCCTCAGACGCAGCACAAGGTGAAGGGTCGACTCCTTCTGGATATTGTAATCAG 474 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | || | ||| || |||||||| || || |||| || | |||||| ||||||| Sbjct 473 CAAGAGTCCTTCCGTCTTCCAGCTGCTTACCCGCAAAGATCAACCTCTGCTGATCCGGAG 414 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||||||||| || || ||| || ||| | | || | ||||| | ||| | Sbjct 413 GGATTCCTTCCTTATCCTGGATCTTAGCCTTCACGTTGTCGATGGTATCAGAACTCTCAA 354 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | |||||| ||||| || || || || || |||||||| Sbjct 353 CCTCGAGGGTGATGGTTTTCCCGGTGAGCGTCTTAACAAAGATCTGCAT 305 >seq56145 Length=1576 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| || || || ||||| | || ||||| || || || || ||||| | | Sbjct 752 CCTCCACGCAGGCGAAGAACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATC-CGC 810 Query 131068 ATG-GTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | | || | | |||||| || ||||| || || |||| || ||||| || |||||||| Sbjct 811 AAGAGTTCTCCCGTCCTCCAGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGG 870 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||||||||| ||| ||| ||| | | || | || || | ||| || | Sbjct 871 AATTCCTTCTTTGTCCTGGATCTTCGCCTTCACGTTGTCGATTGTGTCCGAGGATTCAAC 930 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | |||||| |||||||| ||||| ||||| || |||||| Sbjct 931 CTCCAGTGTGATGGTTTTTCCGGTTAGGGTTTTCACGAAGATTTGCATG 979 >seq56144 Length=1637 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| || || || ||||| | || ||||| || || || || ||||| | | Sbjct 752 CCTCCACGCAGGCGAAGAACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATC-CGC 810 Query 131068 ATG-GTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | | || | | |||||| || ||||| || || |||| || ||||| || |||||||| Sbjct 811 AAGAGTTCTCCCGTCCTCCAGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGG 870 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||||||||| ||| ||| ||| | | || | || || | ||| || | Sbjct 871 AATTCCTTCTTTGTCCTGGATCTTCGCCTTCACGTTGTCGATTGTGTCCGAGGATTCAAC 930 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | |||||| |||||||| ||||| ||||| || |||||| Sbjct 931 CTCCAGTGTGATGGTTTTTCCGGTTAGGGTTTTCACGAAGATTTGCATG 979 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| | ||| || || | || | || || ||||| || |||||||| ||| Sbjct 979 GCCGCCGCGGAGACGGAGTACCAGGTGGAGCGTTGATTCCTTCTGTATGTTGTAGTCGGC 1038 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || ||| || | ||| || || || |||| || |||||||| || ||||| Sbjct 1039 TAGGGTTCGGCCGTCTTCCAACTGTTTTCCGGCAAAGATCAACCGCTGCTGATCGGGAGG 1098 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGA 131185 ||||| || ||||| ||| | | |||| | | || | || |||| ||| || | Sbjct 1099 AATTCCCTCCTTGTCT-TGAATCTTAGCTTTCACGTTGTCGATGGTGTCGGAGGATTCAA 1157 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | ||| | ||||||||||||||| ||||| || || || ||||||| Sbjct 1158 CCTCTAGGGTTATGGTTTTACCGGTTAGGGTTTTCACAAAGATTTGCATGA 1208 >seq56143 Length=1408 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| || || || ||||| | || ||||| || || || || ||||| | | Sbjct 752 CCTCCACGCAGGCGAAGAACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATC-CGC 810 Query 131068 ATG-GTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | | || | | |||||| || ||||| || || |||| || ||||| || |||||||| Sbjct 811 AAGAGTTCTCCCGTCCTCCAGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGG 870 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||||||||| ||| ||| ||| | | || | || || | ||| || | Sbjct 871 AATTCCTTCTTTGTCCTGGATCTTCGCCTTCACGTTGTCGATTGTGTCCGAGGATTCAAC 930 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | || | |||||| || ||||| ||||| ||||| || ||||||| Sbjct 931 CTCCAGTGTGATGGTTTTTCCAGTTAGCGTTTTGACGAAGATTTGCATGA 980 >seq48430 Length=787 Score = 102 bits (112), Expect = 8e-17 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || || ||||| || || ||||||||| || |||||| || || |||||||| || Sbjct 171 GTAGATTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCATCTTCAAGCTGCTTACCG 112 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| | || ||||||||||| ||||||||||| ||||||||||| || || |||| Sbjct 111 GCGAAAATCAAACGCTGCTGATCCGGAGGGATACCTTCTTTGTCTTGAATCTTGGTCTTG 52 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCG 131208 | | || | || ||| || ||||| |||| ||| | |||||| ||| Sbjct 51 ACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTTTTCCCG 1 >seq33732 Length=802 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||||||||| | ||| || ||||| || ||||||||||| Sbjct 477 CCACCACGGAGACGGAGCACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGCA 418 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| ||| |||||||| ||||| || || | || | ||||||||| || |||||| Sbjct 417 AGGGTACGCCCATCCTCTAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGAGGG 358 Query 131128 ATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 357 ATCCCCTCCTTGTC 344 >seq2804 Length=712 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| ||||| | || || ||||| || ||||||||||| Sbjct 483 CCACCACGGAGACGGAGCACCAAATGGAGTGTAGATTCCTTCTGTATGTTGTAATCAGCA 424 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||||| || ||||| || | || | |||||||||||| || ||| Sbjct 423 AGGGTACGGCCATCCTCTAGTTGTTTGCCGGCAAAAATGAGACGCTGCTGGTCAGGTGGG 364 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||| | | || | ||||| | ||| | Sbjct 363 ATCCCTTCCTTGTCTTGAATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACT 304 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || || || || |||||||| ||||| Sbjct 303 TCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAAATTTGCAT 257 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| || | ||||| ||| | ||| | || ||||| || |||||||||||||| ||| Sbjct 711 CCACCACGAAGACGCAACACAAGATGGAGAGTTGACTCTTTCTGAATGTTGTAATCTGCT 652 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | | | || | ||||| ||||| ||||| || |||| | | ||| ||||| || || Sbjct 651 AAAGTTCTGCCA-TCCTCAAGCTGTTTGCCAGCAAAGATAAGCCTCTGTTGGTCGGGTGG 593 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 || || ||||| || ||| | | || |||| | || | ||||| | | ||||| Sbjct 592 AATGCCCTCTTTATC-CTGAATCTTGGCTTTGACATTGTCAATGGTATCAGAGCTCTCGA 534 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || |||||||| || || || ||||| Sbjct 533 CCTCAAGGGTGATGGTCTTTCCAGTGAGAGTTTTCACAAAGATTTGCAT 485 >seq34025 Length=456 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||| ||| | ||| | ||| || || || || |||||||||||| | Sbjct 359 CCACCACGAAGTCGCAACACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAATCGGCC 300 Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || | || | || || ||||| ||||| || |||| || | |||||| || || || Sbjct 299 AAAGTTCTGCCA-TCTTCGAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGTGG 241 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC--TCG 131184 |||||| || ||||| ||||| ||| | | || | || || || || || Sbjct 240 GATTCCCTCCTTGTCTTGTATTTTTGCCTTCACGTTATCAATGGTGTC--TGAACTTTCT 183 Query 131185 ATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || | ||||| ||| || ||||| | ||| || ||||| |||||||| Sbjct 182 ACCTCTAAGGTAATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471572299954560