Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq27426 131 1e-25 seq2799 98.7 7e-16 seq2801 96.9 2e-15 seq56145 91.5 1e-13 seq56144 91.5 1e-13 seq48696 89.7 3e-13 seq56143 82.4 5e-11 >seq27426 Length=5848 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 1031 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 1090 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1091 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1125 Score = 105 bits (116), Expect = 4e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 3028 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 3087 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||||| Sbjct 3088 GCCAATATTTAGCCTT 3103 >seq2799 Length=391 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || |||||||| | || | |||||| ||| ||||| |||||||| ||||| | Sbjct 296 TACCTCCCCTCAAACGTAGGACAAGATGAAGGGTGGATTCCTTCTGAATATTATAATCGG 237 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 || | || | || || | |||||||| ||||| || || | || ||||| | | Sbjct 236 CCAGAGTTCGGCCATCTTCGAGCTGTTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGTG 177 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || |||||||| || || ||||||||| | | || || ||| |||| Sbjct 176 GGATACCCTCTTTGTCTTGTATCTTGGCCTTCACATTGTCAATTGTGTCAGAACTCTCAA 117 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || |||| || ||||| ||||||||||| Sbjct 116 CCTCAAGGGTGATGGTCTTTCCTGTCAGAGTCTTCACAAATATCTGCAT 68 >seq2801 Length=469 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/235 (69%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||||||| || | || | ||||||||| ||||| || || ||||||| Sbjct 303 CATT-CCACCTCTCAATCGGAGTACAAGGTGAAGAGTGGATTCCTTCTGGATGTTGTAAT 245 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 ||| | || | || || |||||||| || ||||| || || | ||| ||||| | Sbjct 244 CAGCAAGGGTGCGACCATCTTCCAATTGTTTCCCAGCAAAGATAAGCCTTTGCTGATCAG 185 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | ||||| || || ||||| ||||| || | | ||||| ||| | Sbjct 184 GAGGAATACCTTCCTTATCTTGGATTTTAGATTTCACGTTGTCTATGGTATCAGAACTCT 125 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || || | || |||||||| || ||||| |||||||| || || ||||| || Sbjct 124 CCACCTCAAGAGTGATAGTTTTGCCGGTCAATGTTTTCACAAAGATTTGCATCTT 70 >seq56145 Length=1576 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC----GTC 38164 |||||||| ||||| ||| || || ||||| ||||| | ||| | |||| ||| Sbjct 770 ACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATCCG-CAAGA---GTTCTCCCGTC 825 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| ||||| ||||| || | || |||||||| | || | ||||||||||| Sbjct 826 CTCCAGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGGAATTCCTTCTTTGTC 885 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || |||||| || | || || || |||||| || | ||| || || Sbjct 886 CTGGATCTTCGCCTTCACGTTGTCGATTGTGTCCGAGGATTCAACCTCCAGTGTGATGGT 945 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||| || || | |||||||||||| || |||||| Sbjct 946 TTTTCCGGTTAGGGTTTTCACGAAGATTTGCATG 979 >seq56144 Length=1637 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC----GTC 38164 |||||||| ||||| ||| || || ||||| ||||| | ||| | |||| ||| Sbjct 770 ACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATCCG-CAAGA---GTTCTCCCGTC 825 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| ||||| ||||| || | || |||||||| | || | ||||||||||| Sbjct 826 CTCCAGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGGAATTCCTTCTTTGTC 885 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || |||||| || | || || || |||||| || | ||| || || Sbjct 886 CTGGATCTTCGCCTTCACGTTGTCGATTGTGTCCGAGGATTCAACCTCCAGTGTGATGGT 945 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||| || || | |||||||||||| || |||||| Sbjct 946 TTTTCCGGTTAGGGTTTTCACGAAGATTTGCATG 979 >seq48696 Length=1151 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| ||||| ||| | ||||| || |||||| || ||||||||||||| | Sbjct 531 CCACCCCTCAGACGCAGCACAAGGTGAAGGGTCGACTCCTTCTGGATATTGTAATCAG-C 473 Query 38151 AAAACACGTT-CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || | | || |||| || | || || || ||||| || | | || ||||| | || Sbjct 472 AAGAGTCCTTCCGTCTTCCAGCTGCTTACCCGCAAAGATCAACCTCTGCTGATCCGGAGG 413 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || ||||| || ||| || || |||||| || | || ||||| ||| ||||| Sbjct 412 GATTCCTTCCTTATCCTGGATCTTAGCCTTCACGTTGTCGATGGTATCAGAACTCTCAAC 353 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || ||||| || || | || || || || |||||||| Sbjct 352 CTCGAGGGTGATGGTTTTCCCGGTGAGCGTCTTAACAAAGATCTGCAT 305 >seq56143 Length=1408 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/214 (69%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC----GTC 38164 |||||||| ||||| ||| || || ||||| ||||| | ||| | |||| ||| Sbjct 770 ACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATCCG-CAAGA---GTTCTCCCGTC 825 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| ||||| ||||| || | || |||||||| | || | ||||||||||| Sbjct 826 CTCCAGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGGAATTCCTTCTTTGTC 885 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || |||||| || | || || || |||||| || | ||| || || Sbjct 886 CTGGATCTTCGCCTTCACGTTGTCGATTGTGTCCGAGGATTCAACCTCCAGTGTGATGGT 945 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||| || || | ||||| ||||| || |||||| Sbjct 946 TTTTCCAGTTAGCGTTTTGACGAAGATTTGCATG 979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334642429344629