Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq17518 235 7e-57 seq17517 235 7e-57 seq46009 179 5e-40 seq25476 89.7 7e-13 >seq17518 Length=2997 Score = 235 bits (260), Expect = 7e-57 Identities = 656/989 (66%), Gaps = 28/989 (3%) Strand=Plus/Minus Query 62720 CGCCC--ATCTATTACAAA-CATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACC 62776 ||||| |||| ||||| | | || | ||||||| ||||| || ||||| ||||| | Sbjct 1647 CGCCCTTATCTCTTACATATCGTGGT-AATGCAATTGATGCAAGGTTACACACGGCAGTC 1589 Query 62777 TCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCT 62836 || | | | | || | |||||||||||||| || || |||| || || || Sbjct 1588 TCTGTTGGACTTGTGTACTCAATTATCTCAGTGCACAGGTTTGATGACTTAATTGTGCCA 1529 Query 62837 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCA 62896 | |||||| || || || || | || || ||||||||| |||| ||| | ||| | ||| Sbjct 1528 AGATTTTGCTGGTTGCTTTTCCTATTGCAAGCATCCTTAAAAAGCATGTAAGGATTTCCA 1469 Query 62897 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTG 62956 ||||| ||||| || | | ||| || ||||| |||| ||| | | | || Sbjct 1468 GTTTCTATCTGTGACTTCAAAATTGCAAACCAGA-GACTTTGTGCTTGA--ACAACCTTC 1412 Query 62957 TATCTCTTTTC----TCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAAC 63012 | | |||||| |||||| || | || |||| || | || || |||||| | Sbjct 1411 TTTG-CTTTTCCAGCTCTTTCATACTGGGTGTACAGATTCTCATATTCTTCACCCCAA-C 1354 Query 63013 ATTGT-CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC- 63070 | | | ||| ||||| |||| || || | || ||||| || || | | || | Sbjct 1353 AGTCTGCCAAACCAGGGGCCTCATTGGGGCAAAACAGGGACCAATCACCAT--TGCTCCG 1296 Query 63071 -ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63129 |||| || |||||| |||||||| | |||||| || ||||| ||||| | | || Sbjct 1295 AACTCTTTCCATAAAAAGATCAGGCACCCAAAGGGCATAAAATAAATCTCGAGCACGCTG 1236 Query 63130 TTCCTCGTTTCC-TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 63188 ||| || ||||| || || |||| || || | ||| | | | ||||| |||||| | Sbjct 1235 TTCTTCCTTTCCGTGGTTTATTTTCAAC-TCCAAGAATTCAAATACATCAGCATGCCATG 1177 Query 63189 GTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAG 63248 |||||||||||| || | | | || | ||| |||||||||||| | |||| | Sbjct 1176 GTTCCAAGTATACAGCAAAAGCACCTTTTCTCTTGCCTCCTCCCTGATCAACATATCGGG 1117 Query 63249 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTG 63308 | |||| ||| | || | || ||||||||| |||||||| || || ||||| || || Sbjct 1116 CAGTGTCATTGAACACACGCAGCATTGGAATGATACCATTAGACGTCCCATTTGTTCCAC 1057 Query 63309 AGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTT 63368 || ||||| ||| || | || ||| || || | ||| || || || || || Sbjct 1056 GAATGTAGCTGCCATATGCCCTTATGTTATGAACAGAAACACCAATCCCTCCAGCAGATT 997 Query 63369 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATC---CA 63425 || || | ||||| ||| || |||||||| || || || ||||||||||| || Sbjct 996 TACTAATGACAGCGCACTCTTTCAATGTATCATAAATCCCTTCAATACTATCATCTTTCA 937 Query 63426 T-CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAG 63484 | ||| | ||| || || ||| || || | | | ||| || ||||| || | Sbjct 936 TACATATCAAG----AAGCAACTACTCAACTGAGGCCTAGGAGTCCCGGCATTGAAAAGA 881 Query 63485 GTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAG 63544 || |||||||| ||||| |||||| | | ||| | | || || |||| || ||| || Sbjct 880 GTTGGAGAAGCATGAGTGAACCATCTCTGAGACATCAAATGATAAGTCTTAACAGCGGAT 821 Query 63545 TCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63604 || ||||| | ||||| || || | || | ||||| ||| || ||||| |||||| Sbjct 820 TCAATATCATGCTTGTGAATCCCAACAGAAACCCTCATTATCATATGTTGAGGCCTTTCA 761 Query 63605 ACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 63664 || | | | | |||||||| || || | || | ||||| || ||||| || Sbjct 760 ACAACAGTCCCATCAACTTTCAACAGATAAGACCTCTCAAGGGTTTTGAATCCAAAGTAA 701 Query 63665 TTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 | || ||| || || || ||||| || Sbjct 700 TCATAGTCAAAATCCCGGTCATAAATTAT 672 >seq17517 Length=2996 Score = 235 bits (260), Expect = 7e-57 Identities = 656/989 (66%), Gaps = 28/989 (3%) Strand=Plus/Minus Query 62720 CGCCC--ATCTATTACAAA-CATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACC 62776 ||||| |||| ||||| | | || | ||||||| ||||| || ||||| ||||| | Sbjct 1646 CGCCCTTATCTCTTACATATCGTGGT-AATGCAATTGATGCAAGGTTACACACGGCAGTC 1588 Query 62777 TCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCT 62836 || | | | | || | |||||||||||||| || || |||| || || || Sbjct 1587 TCTGTTGGACTTGTGTACTCAATTATCTCAGTGCACAGGTTTGATGACTTAATTGTGCCA 1528 Query 62837 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCA 62896 | |||||| || || || || | || || ||||||||| |||| ||| | ||| | ||| Sbjct 1527 AGATTTTGCTGGTTGCTTTTCCTATTGCAAGCATCCTTAAAAAGCATGTAAGGATTTCCA 1468 Query 62897 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTG 62956 ||||| ||||| || | | ||| || ||||| |||| ||| | | | || Sbjct 1467 GTTTCTATCTGTGACTTCAAAATTGCAAACCAGA-GACTTTGTGCTTGA--ACAACCTTC 1411 Query 62957 TATCTCTTTTC----TCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAAC 63012 | | |||||| |||||| || | || |||| || | || || |||||| | Sbjct 1410 TTTG-CTTTTCCAGCTCTTTCATACTGGGTGTACAGATTCTCATATTCTTCACCCCAA-C 1353 Query 63013 ATTGT-CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC- 63070 | | | ||| ||||| |||| || || | || ||||| || || | | || | Sbjct 1352 AGTCTGCCAAACCAGGGGCCTCATTGGGGCAAAACAGGGACCAATCACCAT--TGCTCCG 1295 Query 63071 -ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63129 |||| || |||||| |||||||| | |||||| || ||||| ||||| | | || Sbjct 1294 AACTCTTTCCATAAAAAGATCAGGCACCCAAAGGGCATAAAATAAATCTCGAGCACGCTG 1235 Query 63130 TTCCTCGTTTCC-TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 63188 ||| || ||||| || || |||| || || | ||| | | | ||||| |||||| | Sbjct 1234 TTCTTCCTTTCCGTGGTTTATTTTCAAC-TCCAAGAATTCAAATACATCAGCATGCCATG 1176 Query 63189 GTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAG 63248 |||||||||||| || | | | || | ||| |||||||||||| | |||| | Sbjct 1175 GTTCCAAGTATACAGCAAAAGCACCTTTTCTCTTGCCTCCTCCCTGATCAACATATCGGG 1116 Query 63249 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTG 63308 | |||| ||| | || | || ||||||||| |||||||| || || ||||| || || Sbjct 1115 CAGTGTCATTGAACACACGCAGCATTGGAATGATACCATTAGACGTCCCATTTGTTCCAC 1056 Query 63309 AGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTT 63368 || ||||| ||| || | || ||| || || | ||| || || || || || Sbjct 1055 GAATGTAGCTGCCATATGCCCTTATGTTATGAACAGAAACACCAATCCCTCCAGCAGATT 996 Query 63369 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATC---CA 63425 || || | ||||| ||| || |||||||| || || || ||||||||||| || Sbjct 995 TACTAATGACAGCGCACTCTTTCAATGTATCATAAATCCCTTCAATACTATCATCTTTCA 936 Query 63426 T-CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAG 63484 | ||| | ||| || || ||| || || | | | ||| || ||||| || | Sbjct 935 TACATATCAAG----AAGCAACTACTCAACTGAGGCCTAGGAGTCCCGGCATTGAAAAGA 880 Query 63485 GTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAG 63544 || |||||||| ||||| |||||| | | ||| | | || || |||| || ||| || Sbjct 879 GTTGGAGAAGCATGAGTGAACCATCTCTGAGACATCAAATGATAAGTCTTAACAGCGGAT 820 Query 63545 TCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63604 || ||||| | ||||| || || | || | ||||| ||| || ||||| |||||| Sbjct 819 TCAATATCATGCTTGTGAATCCCAACAGAAACCCTCATTATCATATGTTGAGGCCTTTCA 760 Query 63605 ACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 63664 || | | | | |||||||| || || | || | ||||| || ||||| || Sbjct 759 ACAACAGTCCCATCAACTTTCAACAGATAAGACCTCTCAAGGGTTTTGAATCCAAAGTAA 700 Query 63665 TTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 | || ||| || || || ||||| || Sbjct 699 TCATAGTCAAAATCCCGGTCATAAATTAT 671 >seq46009 Length=1074 Score = 179 bits (198), Expect = 5e-40 Identities = 397/585 (68%), Gaps = 18/585 (3%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || ||||| ||||| ||||||||||||||| |||| ||| || || || || || Sbjct 593 CAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 534 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 32779 || |||||||| || | |||||||||||| ||||||| | || || ||| || || || Sbjct 533 CCTGGCATTAGTCCTCTCTTTTTAAGCCAGAATATGG-CACAGAAGCTTCCTGAGAAAAA 475 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCGCTGTCATG 32836 || ||||| || ||||| ||| ||| ||||| || || || |||| | Sbjct 474 TATCCCTTCAACACATGCAAAACCAACAAGCCTCTCCGCAAATGAAGTGGAACTGTTA-- 417 Query 32837 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896 ||||| | ||||| || |||||| || |||||||| | | || || ||||| Sbjct 416 -ATCCAACTCAATGCCCATTCAGCCTTCCTTGCAACACAAGGAAGATTTTCAATTGCATT 358 Query 32897 AAAGAGATAGtttttttCATTACT--ATCTTTAACATATGTATCAATCAAAAGACTATAC 32954 || | || | | ||| ||| |||||||| |||||| || | || | ||||||| Sbjct 357 GAACA-AT-TTATGCTTCTCGACTGAATCTTTAATATATGTCTCCAACAGCAAACTATAC 300 Query 32955 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTA 33014 || || |||||||| || || || || || ||||| |||||||| | |||||| | Sbjct 299 ATCTCAGAATGAATATTCTCGATTGCTATCTGAAACCCGTAGAATGCCCGAGCCTCCGGG 240 Query 33015 ATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCT 33074 || || || || | ||| | | | || ||||| || || ||||| ||| | | Sbjct 239 ATTTGAACGTCATTCAGAAACCTTGCAGCCAAATTCTCCAAAACGATTCCATCAGATGTT 180 Query 33075 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTC---GTCTGGTGTTAGTTTATTC 33131 |||||||| || | || ||| ||| || | || || ||||| || || | Sbjct 179 GCAAAAAAAGCAAGGACGTGTGATATGAAGTGCTTCTCGGAGTCTG--ACAAGGTT-GCC 123 Query 33132 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191 |||| || | ||| | || | ||| |||||||| | ||||| || || || ||| Sbjct 122 CAATGATGTACATCATAGGAGAGATCTACTTCTTCGGCGGTCCAGAAACTGGCTTCAGCC 63 Query 33192 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 33236 ||||| ||||| | ||||| | | ||| |||||||||| ||| Sbjct 62 TTTTTGTACATCTCCCAGAGTTGTTTGTATCGAATTGGAAACATA 18 >seq25476 Length=346 Score = 89.7 bits (98), Expect = 7e-13 Identities = 205/302 (68%), Gaps = 10/302 (3%) Strand=Plus/Plus Query 32703 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 32762 ||||| ||||| || | ||| ||||||| || |||||||||||||| || || | | || Sbjct 5 TCGTTTGAAAAAGTTAATCCAGGCATTAAACCGCGCTTTTTAAGCCAGAAAATTG-CACA 63 Query 32763 -AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--A 32819 || |||||| || || || ||||| || || || |||| | ||| || | | Sbjct 64 GAAACTTCCAGAGAAAAATATACCTTCAACACAAGCGAAAGCAACGATTCTTTCAGCGAA 123 Query 32820 T-AACCGG-CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAG 32877 | || ||| || || ||||| || ||||| || || ||||| | |||| Sbjct 124 TGAATCGGACGA----ATCGATCCATTTCAACGCCCATTCAGCTTTCTTAGCGATGCAAG 179 Query 32878 GCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTAT 32937 | ||||| || || || | ||| | | || || || | |||| || | ||| || | Sbjct 180 GAATTGTATCAATGGCGTGAAACAAACGATTCTTCTCGGTGTTATCGTTGATATACGTTT 239 Query 32938 CAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGA 32997 | || | ||||||||||| || ||||| || || || || || || || || ||||||| Sbjct 240 CGATAAGGAGACTATACATCTCGGAATGGATATTCTCGATCGCGATCTGGAAACCGTAGA 299 Query 32998 AG 32999 || Sbjct 300 AG 301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633040670856400