Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq25475 230 3e-55 seq46009 187 3e-42 seq35389 86.0 7e-12 >seq25475 Length=2349 Score = 230 bits (254), Expect = 3e-55 Identities = 527/780 (68%), Gaps = 19/780 (2%) Strand=Plus/Plus Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976 ||| || |||||||| ||| | || || ||| | ||||||||||| ||||| || | Sbjct 1358 CAACAACCTATCAGCAACATACTCAATATACGTACTCATCAAATCACCGTTCATCCCAAC 1417 Query 92977 AAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCA 93035 | ||| || || || |||||| || || || ||||||| |||| || || || Sbjct 1418 CA-ACGCGCAAGGAAGCGCGTCGCACACAAACTCCCTCTCGATCTCAACCGCGTCACGCA 1476 Query 93036 AGATT-TCTATTACTCTACTATTTGGTG-GTTTTTGTACGACATAATT-GTACATTAAGC 93092 || ||| || | || || || |||| | | | ||||| ||| | || | Sbjct 1477 CAATCGTCTGC-ACGCG-CTCTTCACTGAGTTTCTTTTTTA-ATAATGAGTAAAGCAAAC 1533 Query 93093 ACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAAC 93152 | || || ||| ||| | ||||||||| ||||| || | ||| || || ||||| | Sbjct 1534 AAGCGAAATCGCAATGAAGACCTTCGTCGCGTGAAATAAGCTCGTTTGAAAAAGTTAATC 1593 Query 93153 CTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTA 93212 |||| | | || ||||| |||||||| || || | | |||||||| |||||||||| Sbjct 1594 CTGGCATTAAACCGCGTTTTTTGAGCCAGAAAATCGCACAGAAACTACCTGAAAAAAATA 1653 Query 93213 TACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA---ATTTGCGGAATTACTGC 93269 ||||||| ||| |||||||| ||||| | || || || || | |||| Sbjct 1654 TACCTTCAACGCAAGCAAATGCTACAATCCTCTCAGCGAATGTATCAGACGAATC----- 1708 Query 93270 TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGT 93329 ||||||||| | ||||| || || |||||| |||||| || | || || || |||| Sbjct 1709 -GATCCATTTCATCGCCCATTCCGCCTTTTTCGCAATACATGGAATCGTCTCAATCGCGT 1767 Query 93330 TAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACA 93389 ||| | || ||| | |||||| || || | |||| | |||||||||| Sbjct 1768 GAAACAAACGATTCTTCTCTGCTGAATCTTTGATATACGCCTCGAGGAGAAGAGAATACA 1827 Query 93390 TTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGA 93449 | || ||||||| |||||| ||||| || |||||||||||||| | || || | || Sbjct 1828 TCTCTGAATGGATATTCTCGATTGCGATCTGGAATCCGTAGAAGGCACGCGCCTCTGAGA 1887 Query 93450 TCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTG 93509 | || | ||||| ||||| | ||||||| || ||| || || ||||| || | Sbjct 1888 TTTGGATTTCTTTCATGAATCTTCCGGCGAGATTCTCCAAGACGATTCCGTCGGAGGCGG 1947 Query 93510 CaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATC-TTTAAGCTTATCCCAA 93568 |||| || || | | |||| | ||| || |||| | || | | | |||| Sbjct 1948 CAAAGAAGGCAAGGACATGCGAAACAAAGTGGCGCTCACCGTCGGTGAGGGAGATCCAGT 2007 Query 93569 TCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTT 93628 | | | ||||| || ||||||||||||||| | ||||| || || ||||| ||||| Sbjct 2008 GCTGGT-TATCTTGGGAGAGATCGACTTCTTCGGCGGTCCAGAAAGAGGCTTCGGCTTTC 2066 Query 93629 TTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTA 93688 |||||||| ||||| || | | ||||| ||||| || ||| ||||| | |||||| Sbjct 2067 TTGTACATTTCCCAGATTTTAGGGTATTGGATTGGGAACATGCAGAAACGGTCTGGGTTA 2126 >seq46009 Length=1074 Score = 187 bits (206), Expect = 3e-42 Identities = 399/589 (68%), Gaps = 8/589 (1%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||| || || | ||| ||||||| || || | ||||| |||||| | Sbjct 594 GCAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTGAGAATGTCAG 535 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 |||||| | ||||||| || || ||||| ||||| | | || || || || ||||| Sbjct 534 ACCTGGCATTAGTCCTCTCTTTTTAAGCCAGAATATGGCACAGAAGCTTCCTGAGAAAAA 475 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 ||| ||||| || |||||| | |||| | || ||||| | |||| ||| | Sbjct 474 TATCCCTTCAACACATGCAAAACCAACAAGCCTCTCCGCAAATGAAGTGGAA---CTGTT 418 Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTT 93330 ||||| | || ||||| || || || | || |||||| || |||| || || || Sbjct 417 AATCCAACTCAATGCCCATTCAGCCTTCCTTGCAACACAAGGAAGATTTTCAATTGCATT 358 Query 93331 AAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACAT 93390 || | | || |||| | |||||| || ||||| || | | || | |||||| Sbjct 357 GAACAATTTATGCTTCTCGACTGAATCTTTAATATATGTCTCCAACAGCAAACTATACAT 298 Query 93391 TTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGAT 93450 |||||||| | |||||| ||||| || || || |||||||| | ||| |||| ||| Sbjct 297 CTCAGAATGAATATTCTCGATTGCTATCTGAAACCCGTAGAATGCCCGAGCCTCCGGGAT 238 Query 93451 CTGCACTTC-TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTG 93509 || || || || ||||| || | | | ||| || || || ||||| |||| || Sbjct 237 TTGAACGTCATTCAGAAAC-CTTGCAGCCAAATTCTCCAAAACGATTCCATCAGATGTTG 179 Query 93510 CaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTT-AAGCTTATCCCAA 93568 |||||||||| | | || ||| || || ||||| ||| ||| || ||||| Sbjct 178 CAAAAAAAGCAAGGACGTGTGATATGAAGTGCTTCTCGGAGTCTGACAAGGTTG-CCCAA 120 Query 93569 TCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTT 93628 | || ||| | || ||||| ||||||||| | ||||| || ||||| || ||| Sbjct 119 TGATGTACATCATAGGAGAGATCTACTTCTTCGGCGGTCCAGAAACTGGCTTCAGCCTTT 60 Query 93629 TTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAAC 93677 |||||||| ||||| | | || ||| |||||||||| || ||| ||| Sbjct 59 TTGTACATCTCCCAGAGTTGTTTGTATCGAATTGGAAACAT-ACAGAAC 12 >seq35389 Length=1540 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||||| | | ||||| Sbjct 1346 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTGAGAGAGCG 1405 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 1406 TGGGTTCAAATCCCACTTCTGACA 1429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556341116619160