Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq56145 145 2e-29 seq56144 145 2e-29 seq56143 145 2e-29 seq53415 141 2e-28 seq48696 127 5e-24 seq2799 118 2e-21 seq51626 87.8 4e-12 >seq56145 Length=1576 Score = 145 bits (160), Expect = 2e-29 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| || || || || |||| || ||| || || |||||||| || || Sbjct 524 CCACCACGGAGCCTGAGAACAAGGTGAAGTGTAGATTCCTTCTGAATATTATAATCAGCA 583 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || |||||||| ||||| | |||||| || || ||||| |||||||||||| | ||| Sbjct 584 AGAGTGCGTCCATCTTCAAGTTGTTTACCAGCAAAGATAAGACGCTGTTGATCAGGTGGT 643 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA---TTCT 288423 || ||||| |||||||| || || |||||||| || || |||| ||| ||| || Sbjct 644 ATCCCTTCCTTATCCTGAATCTTGGCTTTCACATTATCAATAGTATC---CGAACTCTCC 700 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | || || ||||| || || | ||||||||| || |||||||| Sbjct 701 ACCTCCAAAGTAATTGTCTTACCCGTTAAAGTCTTGACAAAAATCTGCAT 750 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||||||||| || || || || | ||||| || | ||| ||||| || ||| Sbjct 788 TCTTTCTGGATATTATAATCCGCAAGAGTTCTCCCGTCCTCCAGTTGCTTTCCCGCAAAG 847 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||||||||| || ||||||||||| |||||||| ||||| |||||||| Sbjct 848 ATCAATCGCTGTTGATCCGGAGGAATTCCTTCTTTGTCCTGGATCTTCGCCTTCACGTTG 907 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || ||||| || || || ||||| || || ||||| || || || ||| Sbjct 908 TCGATTGTGTCCGAGGATTCAACCTCCAGTGTGATGGTTTTTCCGGTTAGGGTTTTCACG 967 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 968 AAGATTTGCAT 978 >seq56144 Length=1637 Score = 145 bits (160), Expect = 2e-29 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| || || || || |||| || ||| || || |||||||| || || Sbjct 524 CCACCACGGAGCCTGAGAACAAGGTGAAGTGTAGATTCCTTCTGAATATTATAATCAGCA 583 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || |||||||| ||||| | |||||| || || ||||| |||||||||||| | ||| Sbjct 584 AGAGTGCGTCCATCTTCAAGTTGTTTACCAGCAAAGATAAGACGCTGTTGATCAGGTGGT 643 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA---TTCT 288423 || ||||| |||||||| || || |||||||| || || |||| ||| ||| || Sbjct 644 ATCCCTTCCTTATCCTGAATCTTGGCTTTCACATTATCAATAGTATC---CGAACTCTCC 700 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | || || ||||| || || | ||||||||| || |||||||| Sbjct 701 ACCTCCAAAGTAATTGTCTTACCCGTTAAAGTCTTGACAAAAATCTGCAT 750 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||||||||| || || || || | ||||| || | ||| ||||| || ||| Sbjct 788 TCTTTCTGGATATTATAATCCGCAAGAGTTCTCCCGTCCTCCAGTTGCTTTCCCGCAAAG 847 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||||||||| || ||||||||||| |||||||| ||||| |||||||| Sbjct 848 ATCAATCGCTGTTGATCCGGAGGAATTCCTTCTTTGTCCTGGATCTTCGCCTTCACGTTG 907 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || ||||| || || || ||||| || || ||||| || || || ||| Sbjct 908 TCGATTGTGTCCGAGGATTCAACCTCCAGTGTGATGGTTTTTCCGGTTAGGGTTTTCACG 967 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 968 AAGATTTGCAT 978 Score = 125 bits (138), Expect = 2e-23 Identities = 170/236 (72%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || |||||||| | ||||| || || | ||| ||| || || || || |||| Sbjct 976 CATG-CCGCCGCGGAGACGGAGTACCAGGTGGAGCGTTGATTCCTTCTGTATGTTGTAGT 1034 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 |||| || || || |||||||| || |||||||| || ||||||| ||||| ||| Sbjct 1035 CGGCTAGGGTTCGGCCGTCTTCCAACTGTTTTCCGGCAAAGATCAACCGCTGCTGATCGG 1094 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || ||||| || || || || || || ||||||||||| || || | ||| |||| Sbjct 1095 GAGGAATTCCCTCCTTGTCTTGAATCTTAGCTTTCACGTTGTCGATGGTGTCGGAGGATT 1154 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 | || || || || || || || ||||| || || || || || || ||||| ||| Sbjct 1155 CAACCTCTAGGGTTATGGTTTTACCGGTTAGGGTTTTCACAAAGATTTGCATGATG 1210 >seq56143 Length=1408 Score = 145 bits (160), Expect = 2e-29 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| || || || || |||| || ||| || || |||||||| || || Sbjct 524 CCACCACGGAGCCTGAGAACAAGGTGAAGTGTAGATTCCTTCTGAATATTATAATCAGCA 583 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || |||||||| ||||| | |||||| || || ||||| |||||||||||| | ||| Sbjct 584 AGAGTGCGTCCATCTTCAAGTTGTTTACCAGCAAAGATAAGACGCTGTTGATCAGGTGGT 643 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA---TTCT 288423 || ||||| |||||||| || || |||||||| || || |||| ||| ||| || Sbjct 644 ATCCCTTCCTTATCCTGAATCTTGGCTTTCACATTATCAATAGTATC---CGAACTCTCC 700 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | || || ||||| || || | ||||||||| || |||||||| Sbjct 701 ACCTCCAAAGTAATTGTCTTACCCGTTAAAGTCTTGACAAAAATCTGCAT 750 Score = 131 bits (144), Expect = 4e-25 Identities = 146/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||||||||| || || || || | ||||| || | ||| ||||| || ||| Sbjct 788 TCTTTCTGGATATTATAATCCGCAAGAGTTCTCCCGTCCTCCAGTTGCTTTCCCGCAAAG 847 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||||||||| || ||||||||||| |||||||| ||||| |||||||| Sbjct 848 ATCAATCGCTGTTGATCCGGAGGAATTCCTTCTTTGTCCTGGATCTTCGCCTTCACGTTG 907 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || ||||| || || || ||||| || || || || || || |||||| Sbjct 908 TCGATTGTGTCCGAGGATTCAACCTCCAGTGTGATGGTTTTTCCAGTTAGCGTTTTGACG 967 Query 288463 AATATCTGCATTATG 288477 || || ||||| ||| Sbjct 968 AAGATTTGCATGATG 982 >seq53415 Length=940 Score = 141 bits (156), Expect = 2e-28 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || |||||||| | || || || ||||| || ||||||||| Sbjct 381 CCACCGCGGAGACGGAGGACGAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGCG 322 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| |||||||| || || || || |||||||| |||||||| ||| ||||| Sbjct 321 AGAGTGCGGCCGTCTTCCAACTGCTTCCCGGCGAAGATGAGACGCTGCTGA---TCTGGA 265 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || || ||||| || | || ||||| || || | ||| || || Sbjct 264 GGAATCCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATGGTGTCGGAAGACTCA 205 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || ||||||||||| || || || || ||||| |||||||| Sbjct 204 ACCTCGAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 155 >seq48696 Length=1151 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || || ||||||| || ||| || ||||| || ||||| || Sbjct 303 CCTCCACGGAGACGGAGGACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGCA 244 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | |||||||| |||||||||||||| || || | || Sbjct 243 AGAGTACGACCGTCCTCAAGCTGTTTTCCGGCGAAGATCAGACGTTGCTGGTCAGGGGGA 184 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 |||||||| || |||||||| || || || ||||| || || | || ||| || Sbjct 183 ATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAACTC---TCG 127 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| ||||| || || || |||||||| ||||| Sbjct 126 ACCTCGAGAGTGATGGTCTTTCCGGTGAGGGTTTTAACGAATATTTGCAT 77 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| || || || || || | ||||||||| | || || || || ||| Sbjct 495 TCCTTCTGGATATTGTAATCAGCAAGAGTCCTTCCGTCTTCCAGCTGCTTACCCGCAAAG 436 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||| ||| ||||||||||| ||||||||||| || || |||||||| Sbjct 435 ATCAACCTCTGCTGATCCGGAGGGATTCCTTCCTTATCCTGGATCTTAGCCTTCACGTTG 376 Query 288403 TCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | ||| ||| || || ||||| ||||| || |||||||| || ||||| Sbjct 375 TCGATGGTATCAGAACTC---TCAACCTCGAGGGTGATGGTTTTCCCGGTGAGCGTCTTA 319 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 318 ACAAAGATCTGCAT 305 >seq2799 Length=391 Score = 118 bits (130), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||||| ||| ||| || || |||||||| ||||| || || || || ||| Sbjct 279 AGGACAAGATGAAGGGTGGATTCCTTCTGAATATTATAATCGGCCAGAGTTCGGCCATCT 220 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | |||||||| || ||||| || | ||| ||| |||||| || ||||| || Sbjct 219 TCGAGCTGTTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGTGGGATACCCTCTTTGTCT 160 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATC 288438 || || || || ||||| || || || | || ||| || || || || ||||| Sbjct 159 TGTATCTTGGCCTTCACATTGTCAATTGTGTCAGAACTC---TCAACCTCAAGGGTGATG 103 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||||||||| || ||||||||||| Sbjct 102 GTCTTTCCTGTCAGAGTCTTCACAAATATCTGCAT 68 >seq51626 Length=1787 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 72702 AGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGAT 72761 ||||||||||||| ||| ||||| || ||||||||||||||||||||||||||||| Sbjct 888 AGAGATTGGGGATTTGCTGGTGATTATGTGGAAGCAATGTGGTTGATGCTGCAACAAGAG 947 Query 72762 ACTCCGGATGACTATGTGATTGCAAC 72787 | || ||||| ||||| |||| || Sbjct 948 AAGCCTGATGATTATGTTGTTGCGAC 973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178525979833802