Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq33732 104 3e-17 seq56144 87.8 2e-12 seq56143 87.8 2e-12 seq56145 84.2 2e-11 seq2804 84.2 2e-11 >seq33732 Length=802 Score = 104 bits (114), Expect = 3e-17 Identities = 159/223 (71%), Gaps = 8/223 (4%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||| ||||| | ||| ||||| || || ||||||||||| || || ||| | Sbjct 466 ACGGAGCACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGCAAGGGTACGCCC 407 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || ||||| ||||||||||| || ||||| |||||||| || | || | | |||||| Sbjct 406 ATCCTCTAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGAGGGATCCCCTCCTT 347 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 42168 || | ||| | || | | | | | | | | || || ||| || || || | | Sbjct 346 GT-CTTGAATCTTGGACTTAACATTGTCTATGGTATCTGAACTC---TCAACTTCAAGAG 291 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||||||| ||||| || || ||||| |||||||||||||| || Sbjct 290 TGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATTTGCATCTT 248 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||||||| | ||| | ||| || || || || |||||||| |||| ||| | | Sbjct 693 CGCAACACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAATCGGCCAAAGTTCTGCCA 634 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || ||||| || ||||| || ||||| | ||| ||||| | ||| | || ||| ||| Sbjct 633 TCTTCGAGCTGTTTGCCAGCAAAGATGAGCCTCTGTTGGTCCGGTGGAATGCCCTCTTTG 574 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCG---CTCGATTCCACATCGACCGTG 42170 ||| ||| || |||| | | | ||||| ||| ||||| || | || Sbjct 573 TCCTGGATCTTGGCCTTGACATTGTCTATGGTGTCTGAACTC---TCCACCTCTAGTGTA 517 Query 42171 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || || || || || || |||||||||||||| Sbjct 516 ATGGTCTTTCCTGTAAGGGTTTTGACAAAGATTTGCAT 479 >seq56144 Length=1637 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| || || || || || |||| || | ||| || || || || Sbjct 1016 TCCTTCTGTATGTTGTAGTCGGCTAGGGTTCGGCCGTCTTCCAACTGTTTTCCGGCAAAG 1075 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | |||||||| |||| || | | ||||||||| ||| | || | || ||| Sbjct 1076 ATCAACCGCTGCTGATCGGGAGGAATTCCCTCCTTGTCT-TGAATCTTAGCTTTCACGTT 1134 Query 42138 GCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | |||||| ||||| || || | || |||||||| || ||||| || || || Sbjct 1135 GTCGATGGTGTCGGAGGATTCAACCTCTAGGGTTATGGTTTTACCGGTTAGGGTTTTCAC 1194 Query 42197 AAAGATTTGCAT 42208 |||||||||||| Sbjct 1195 AAAGATTTGCAT 1206 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||| | || ||| || || ||||| ||||| || ||||| | | |||| || Sbjct 770 ACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATCCGCAAGAGTTCTCCCGTCCTCC 829 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || ||||| || || || || | |||||| || || | || | | || |||||| | Sbjct 830 AGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGGAATTCCTTCTTTGTCCTGG 889 Query 42120 ATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 || || || | ||| | | | ||||| ||||| || || | ||||||||||| Sbjct 890 ATCTTCGCCTTCA-CGTTGTCGATTGTGTCCGAGGATTCAACCTCCAGTGTGATGGTTTT 948 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| || || || ||||||||||| Sbjct 949 TCCGGTTAGGGTTTTCACGAAGATTTGCAT 978 >seq56143 Length=1408 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||| | || ||| || || ||||| ||||| || ||||| | | |||| || Sbjct 770 ACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATCCGCAAGAGTTCTCCCGTCCTCC 829 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || ||||| || || || || | |||||| || || | || | | || |||||| | Sbjct 830 AGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGGAATTCCTTCTTTGTCCTGG 889 Query 42120 ATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 || || || | ||| | | | ||||| ||||| || || | ||||||||||| Sbjct 890 ATCTTCGCCTTCA-CGTTGTCGATTGTGTCCGAGGATTCAACCTCCAGTGTGATGGTTTT 948 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||||||| || || ||||||||||| Sbjct 949 TCCAGTTAGCGTTTTGACGAAGATTTGCAT 978 >seq56145 Length=1576 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||| | || ||| || || ||||| ||||| || ||||| | | |||| || Sbjct 770 ACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATCCGCAAGAGTTCTCCCGTCCTCC 829 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || ||||| || || || || | |||||| || || | || | | || |||||| | Sbjct 830 AGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGGAATTCCTTCTTTGTCCTGG 889 Query 42120 ATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 || || || | ||| | | | ||||| ||||| || || | ||||||||||| Sbjct 890 ATCTTCGCCTTCA-CGTTGTCGATTGTGTCCGAGGATTCAACCTCCAGTGTGATGGTTTT 948 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| || || || ||||||||||| Sbjct 949 TCCGGTTAGGGTTTTCACGAAGATTTGCAT 978 >seq2804 Length=712 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||||||| | ||| | || ||| || ||||| |||||||| || | ||| | | Sbjct 700 ACGCAACACAAGATGGAGAGTTGACTCTTTCTGAATGTTGTAATCTGCTAAAGTTCTGCC 641 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || ||||| || ||||| || || || | ||| ||||||| ||| | || ||| || Sbjct 640 ATCCTCAAGCTGTTTGCCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTT 581 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCG 42168 ||| ||| | || | ||||| | | | || || |||| || || || | | Sbjct 580 ATCC-TGAATCTTGGCTTTGACATTGTCAATGGTATCAGAGCTC---TCGACCTCAAGGG 525 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||| || || || || || || |||||||||||||| Sbjct 524 TGATGGTCTTTCCAGTGAGAGTTTTCACAAAGATTTGCAT 485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542705853444560