Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq53415 100 3e-16 seq56144 93.3 4e-14 seq2804 91.5 1e-13 seq33732 89.7 5e-13 seq48696 86.0 6e-12 seq56143 82.4 8e-11 >seq53415 Length=940 Score = 100 bits (110), Expect = 3e-16 Identities = 143/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| || |||||||||||| | ||| || ||| || | || || |||| Sbjct 350 TTGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCTTCCAACTGCTTCCCGG 291 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| |||||||| || || ||||| || || || ||||| || | || || || Sbjct 290 CGAAGATGAGACGCTGCTGATCTGGAGGAATCCCCTCCTTGTC-TTGGATCTTGGTCTTG 232 Query 138539 A--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 | ||| || | |||||||| ||||| ||||||| || | ||| || || || || || Sbjct 231 ACGTTG-TCGATGGTGTCGGAAGACTCAACCTCGAGGGTTATCGTCTTCCCCGTTAGGGT 173 Query 138597 TTTTACAAAAATCTGCAT 138614 ||| || || |||||||| Sbjct 172 TTTCACGAAGATCTGCAT 155 >seq56144 Length=1637 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| ||||| || |||||||||||| | || || ||| || | ||||| |||| Sbjct 1011 TTGATTCCTTCTGTATGTTGTAGTCGGCTAGGGTTCGGCCGTCTTCCAACTGTTTTCCGG 1070 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | |||| | ||||| || || ||||| || || || ||||| ||| | || | ||| Sbjct 1071 CAAAGATCAACCGCTGCTGATCGGGAGGAATTCCCTCCTTGTC-TTGAATCTTAGCTTTC 1129 Query 138539 A--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 | ||| || | |||||||| || || ||||| | || | |||||||| || || || Sbjct 1130 ACGTTG-TCGATGGTGTCGGAGGATTCAACCTCTAGGGTTATGGTTTTACCGGTTAGGGT 1188 Query 138597 TTTTACAAAAATCTGCATG 138615 ||| ||||| || |||||| Sbjct 1189 TTTCACAAAGATTTGCATG 1207 >seq2804 Length=712 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 || || || | |||||| || | ||| | ||||||| || ||||||||||| || ||| Sbjct 711 CCACCACGAAGACGCAACACAAGATGGAGAGTTGACTCTTTCTGAATGTTGTAATCTGCT 652 Query 138447 CATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | ||| | || | ||||| || ||||| || | | |||| || | ||||||||| || | Sbjct 651 -AAAGTTCTGCCA-TCCTCAAGCTGTTTGCCAGCAAAGATAAGCCTCTGTTGGTCGGGTG 594 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTC 138563 | || || ||||| || ||| | || | ||| |||| || | ||| || | ||| Sbjct 593 GAATGCCCTCTTTATC-CTGAATCTTGGCTTTGACATTG-TCAATGGTATCAGAGCTCTC 536 Query 138564 CACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| | || | || || ||||| |||||||| ||||| || ||||| Sbjct 535 GACCTCAAGGGTGATGGTCTTTCCAGTGAGAGTTTTCACAAAGATTTGCAT 485 >seq33732 Length=802 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGA 138458 ||||| || | ||| | | | || || || || |||||||| ||| || ||| | || | Sbjct 693 CGCAACACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAATCGGCCAAAGTTCTGCCA 634 Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 || ||||| ||||| || | | |||| || | |||||||||||| || || || ||||| Sbjct 633 -TCTTCGAGCTGTTTGCCAGCAAAGATGAGCCTCTGTTGGTCCGGTGGAATGCCCTCTTT 575 Query 138519 GTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCA 138577 ||| ||| || || | |||| || | |||||| | ||||||||| | || | Sbjct 574 GTCCTGGATCTTGGCCTTGACATTG-TCTATGGTGTCTGAACTCTCCACCTCTAGTGTAA 516 Query 138578 GCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || || || ||||| ||||| || ||||| Sbjct 515 TGGTCTTTCCTGTAAGGGTTTTGACAAAGATTTGCAT 479 >seq48696 Length=1151 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || | ||| | | |||| ||||| || ||||||||||| Sbjct 303 CCTCCACGGAGACGGAGGACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGCA 244 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| |||||| || ||||| |||| |||| ||||| || ||||| || || Sbjct 243 AGAGTACGACCGTCCTCAAGCTGTTTTCCGGCGAAGATCAGACGTTGCTGGTCAGGGGGA 184 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || || | | || | |||||| | ||| ||| Sbjct 183 ATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAACTCTCGACC 124 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || || || || ||||| || || || ||||| Sbjct 123 TCGAGAGTGATGGTCTTTCCGGTGAGGGTTTTAACGAATATTTGCAT 77 >seq56143 Length=1408 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| || | ||| ||||| | | ||||| || || || || || || Sbjct 752 CCTCCACGCAGGCGAAGAACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATCCGCA 811 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | | |||||| ||||| || || | | |||| | |||||||| |||||||| Sbjct 812 AGAGTTCTCCCGTCCTCCAGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGGA 871 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| ||| || || | | || | ||||| | || || ||| Sbjct 872 ATTCCTTCTTTGTCCTGGATCTTCGCCTTCACGTTGTCGATTGTGTCCGAGGATTCAACC 931 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | ||||| ||||| || ||||| || || || |||||| Sbjct 932 TCCAGTGTGATGGTTTTTCCAGTTAGCGTTTTGACGAAGATTTGCATG 979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495799269318480