Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq34025 125 7e-24 seq53415 113 4e-20 seq48696 107 2e-18 seq48430 105 6e-18 seq56145 104 2e-17 seq56144 104 2e-17 seq2799 104 2e-17 seq56143 98.7 9e-16 seq33732 95.1 1e-14 seq2801 91.5 1e-13 >seq34025 Length=456 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||||||| | ||| | || || ||||| || || ||||||||| || Sbjct 359 CCACCACGAAGTCGCAACACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAATCGGCC 300 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| || |||||||| ||||| ||||||| | ||||||||| || || Sbjct 299 AAAGTTCTGCCATCTTCGAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGTGGG 240 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||||||||| ||||| ||| | | || | |||||| | ||| || || Sbjct 239 ATTCCCTCCTTGTCTTGTATTTTTGCCTTCACGTTATCAATGGTGTCTGAACTTTCTACC 180 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || ||||||| ||| || || || |||||||| Sbjct 179 TCTAAGGTAATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 133 >seq53415 Length=940 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || |||||||| | || | || | ||| | || ||||| || || || ||||| ||| Sbjct 384 GCGCCACCGCGGAGACGGAGGACGAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCG 325 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | | ||||| || || | ||| || || ||| |||| | ||||||||||| ||| Sbjct 324 GCGAGAGTGCGGCCGTCTTCCAACTGCTTCCCGGCGAAGATGAGACGCTGCTGATCTGGA 265 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTC 127062 || || ||||||||||| ||| || ||||| |||| |||| |||||| | | ||| Sbjct 264 GGAATCCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTG-TCGATGGTGTCGGAAGACTC 206 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| | ||| || || || || ||||| || || |||||||| Sbjct 205 AACCTCGAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 155 >seq48696 Length=1151 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || || || ||||| || | | || ||| || || ||||||||||| Sbjct 273 GTTGATTCCTTCTGGATGTTGTAGTCAGCAAGAGTACGACCGTCCTCAAGCTGTTTTCCG 214 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| || ||||| || || || || || ||||||||| ||| || |||| Sbjct 213 GCGAAGATCAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTG 154 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| |||||| | ||||||||| |||| || | || || ||||| || || Sbjct 153 ACGTTG-TCGATGGTGTCAGAACTCTCGACCTCGAGAGTGATGGTCTTTCCGGTGAGGGT 95 Query 127096 TTTTACAAAAATCTGCAT 127113 ||| || || || ||||| Sbjct 94 TTTAACGAATATTTGCAT 77 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | || | || ||||| || || ||||||||||| | | || | Sbjct 519 CGCAGCACAAGGTGAAGGGTCGACTCCTTCTGGATATTGTAATCAGCAAGAGTCCTTCCG 460 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || ||||||| | ||||||||| ||||| || || ||||| Sbjct 459 TCTTCCAGCTGCTTACCCGCAAAGATCAACCTCTGCTGATCCGGAGGGATTCCTTCCTTA 400 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| || ||| | |||| |||| ||| || | |||||| || |||| ||| | Sbjct 399 TCCTGGATCTTAGCCTTCACGTTG-TCGATGGTATCAGAACTCTCAACCTCGAGGGTGAT 341 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| ||||| || || || ||||| |||||||| Sbjct 340 GGTTTTCCCGGTGAGCGTCTTAACAAAGATCTGCAT 305 >seq48430 Length=787 Score = 105 bits (116), Expect = 6e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| || || || |||||||||||| ||| ||||| ||| || ||||| || || Sbjct 171 GTAGATTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCATCTTCAAGCTGCTTACCG 112 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | ||||| ||||||||||| ||||| || || || ||||| || || |||| Sbjct 111 GCGAAAATCAAACGCTGCTGATCCGGAGGGATACCTTCTTTGTCTTGAATCTTGGTCTTG 52 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCG 127087 | | |||| |||||| | |||||||| |||| ||| | ||||| ||| Sbjct 51 ACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTTTTCCCG 1 >seq56145 Length=1576 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||| | ||||||||||| || ||||| ||||| | | || | || || Sbjct 770 ACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATCCGCAAGAGTTCTCCCGTCCTCC 829 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || || ||||| || ||||||||||||| ||||| ||||| || || || |||||| | Sbjct 830 AGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGGAATTCCTTCTTTGTCCTGG 889 Query 127025 ATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 || ||| ||| | |||| |||| ||||||| || || || | || | ||||| Sbjct 890 ATCTTCGCCTTCACGTTG-TCGATTGTGTCCGAGGATTCAACCTCCAGTGTGATGGTTTT 948 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||||| || ||||| || || || |||||| Sbjct 949 TCCGGTTAGGGTTTTCACGAAGATTTGCATG 979 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| || || |||||||| ||||| | | ||||| ||| || || ||||| ||| Sbjct 554 GTAGATTCCTTCTGAATATTATAATCAGCAAGAGTGCGTCCATCTTCAAGTTGTTTACCA 613 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||| ||||| || ||||| || ||||| ||| ||| | | |||| Sbjct 614 GCAAAGATAAGACGCTGTTGATCAGGTGGTATCCCTTCCTTATCC-TGAATCTTGGCTTT 672 Query 127037 -AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | || | || |||| |||||| || || | || | || || || || | ||| Sbjct 673 CACATTATCAATAGTATCCGAACTCTCCACCTCCAAAGTAATTGTCTTACCCGTTAAAGT 732 Query 127096 TTTTACAAAAATCTGCAT 127113 || |||||||||||||| Sbjct 733 CTTGACAAAAATCTGCAT 750 >seq56144 Length=1637 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||| | ||||||||||| || ||||| ||||| | | || | || || Sbjct 770 ACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATCCGCAAGAGTTCTCCCGTCCTCC 829 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || || ||||| || ||||||||||||| ||||| ||||| || || || |||||| | Sbjct 830 AGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGGAATTCCTTCTTTGTCCTGG 889 Query 127025 ATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 || ||| ||| | |||| |||| ||||||| || || || | || | ||||| Sbjct 890 ATCTTCGCCTTCACGTTG-TCGATTGTGTCCGAGGATTCAACCTCCAGTGTGATGGTTTT 948 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||||| || ||||| || || || |||||| Sbjct 949 TCCGGTTAGGGTTTTCACGAAGATTTGCATG 979 Score = 104 bits (114), Expect = 2e-17 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | || | |||| || | ||| || || || || || ||||| ||| | Sbjct 980 CCGCCGCGGAGACGGAGTACCAGGTGGAGCGTTGATTCCTTCTGTATGTTGTAGTCGGCT 1039 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || | ||||||||| || ||||||| ||||||||||||||||| Sbjct 1040 AGGGTTCGGCCGTCTTCCAACTGTTTTCCGGCAAAGATCAACCGCTGCTGATCGGGAGGA 1099 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTT--GAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || |||||||||| | ||| | | |||| |||| |||| |||||| | || | Sbjct 1100 ATTCCCTCCTTGT-CTTGAATCTTAGCTTTCACGTTG-TCGATGGTGTCGGAGGATTCAA 1157 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | || | ||| | ||||| ||||| || ||||| ||||| || |||||| Sbjct 1158 CCTCTAGGGTTATGGTTTTACCGGTTAGGGTTTTCACAAAGATTTGCATG 1207 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| || || |||||||| ||||| | | ||||| ||| || || ||||| ||| Sbjct 554 GTAGATTCCTTCTGAATATTATAATCAGCAAGAGTGCGTCCATCTTCAAGTTGTTTACCA 613 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||| ||||| || ||||| || ||||| ||| ||| | | |||| Sbjct 614 GCAAAGATAAGACGCTGTTGATCAGGTGGTATCCCTTCCTTATCC-TGAATCTTGGCTTT 672 Query 127037 -AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | || | || |||| |||||| || || | || | || || || || | ||| Sbjct 673 CACATTATCAATAGTATCCGAACTCTCCACCTCCAAAGTAATTGTCTTACCCGTTAAAGT 732 Query 127096 TTTTACAAAAATCTGCAT 127113 || |||||||||||||| Sbjct 733 CTTGACAAAAATCTGCAT 750 >seq2799 Length=391 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || |||||||| |||||| ||| || || ||| || |||||||||||| Sbjct 264 GTGGATTCCTTCTGAATATTATAATCGGCCAGAGTTCGGCCATCTTCGAGCTGTTTTCCA 205 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | | ||||||||| || || || ||||| ||||| || || ||| Sbjct 204 GCAAAGATAAGCCTCTGCTGATCCGGTGGGATACCCTCTTTGTCTTGTATCTTGGCCTTC 145 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||||| | |||||| || || | ||| | || || || |||||||| Sbjct 144 ACATTGTCAATTGTGTCAGAACTCTCAACCTCAAGGGTGATGGTCTTTCCTGTCAGAGTC 85 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 84 TTCACAAATATCTGCAT 68 >seq56143 Length=1408 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||| | ||||||||||| || ||||| ||||| | | || | || || Sbjct 770 ACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATCCGCAAGAGTTCTCCCGTCCTCC 829 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || || ||||| || ||||||||||||| ||||| ||||| || || || |||||| | Sbjct 830 AGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGGAATTCCTTCTTTGTCCTGG 889 Query 127025 ATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 || ||| ||| | |||| |||| ||||||| || || || | || | ||||| Sbjct 890 ATCTTCGCCTTCACGTTG-TCGATTGTGTCCGAGGATTCAACCTCCAGTGTGATGGTTTT 948 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || || ||||| || || || |||||| Sbjct 949 TCCAGTTAGCGTTTTGACGAAGATTTGCATG 979 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| || || |||||||| ||||| | | ||||| ||| || || ||||| ||| Sbjct 554 GTAGATTCCTTCTGAATATTATAATCAGCAAGAGTGCGTCCATCTTCAAGTTGTTTACCA 613 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||| ||||| || ||||| || ||||| ||| ||| | | |||| Sbjct 614 GCAAAGATAAGACGCTGTTGATCAGGTGGTATCCCTTCCTTATCC-TGAATCTTGGCTTT 672 Query 127037 -AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | || | || |||| |||||| || || | || | || || || || | ||| Sbjct 673 CACATTATCAATAGTATCCGAACTCTCCACCTCCAAAGTAATTGTCTTACCCGTTAAAGT 732 Query 127096 TTTTACAAAAATCTGCAT 127113 || |||||||||||||| Sbjct 733 CTTGACAAAAATCTGCAT 750 >seq33732 Length=802 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||| ||||| | || || || || || || |||||||| | Sbjct 477 CCACCACGGAGACGGAGCACTAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGCA 418 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| ||||| || || ||||| | || | ||||||||||| ||||| Sbjct 417 AGGGTACGCCCATCCTCTAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGAGGG 358 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||||||||| || || ||| | | || | ||| || | |||||| ||| Sbjct 357 ATCCCCTCCTTGTCTTGAATCTTGGACTTAACATTGTCTATGGTATCTGAACTCTCAACT 298 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| ||||| || || ||||| || ||||| Sbjct 297 TCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATTTGCAT 251 >seq2801 Length=469 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | ||||| | || | || | || || || || || || |||||||| | Sbjct 300 TCCACCTCTCAATCGGAGTACAAGGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGC 241 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | |||||| ||| || | ||||| ||||| |||| | | |||||||| ||||| Sbjct 240 AAGGGTGCGACCATCTTCCAATTGTTTCCCAGCAAAGATAAGCCTTTGCTGATCAGGAGG 181 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || ||||| || |||||| || | ||||| | | ||| || | |||||| | Sbjct 180 AATACCTTCCTTATCTTGGATTTTAGATTTCACGTTGT-CTATGGTATCAGAACTCTCCA 122 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | || | ||||||||||||| ||||| ||||| || ||||| Sbjct 121 CCTCAAGAGTGATAGTTTTGCCGGTCAATGTTTTCACAAAGATTTGCAT 73 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475057044822160