Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq46009 104 3e-17 seq20510 104 3e-17 seq25475 100 3e-16 seq17518 93.3 5e-14 seq17517 93.3 5e-14 >seq46009 Length=1074 Score = 104 bits (114), Expect = 3e-17 Identities = 133/182 (73%), Gaps = 1/182 (1%) Strand=Plus/Minus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| ||||||||||| | ||||| |||||||| ||||| |||||| Sbjct 591 AGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTGAGAATGTCAGACC 532 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 |||||| || || | ||| || | |||||| || ||||| || || ||||| || || Sbjct 531 TGGCATTAGTCCTCTCTTTTTAAGCCAGAATATGGCACAGAAGCTTCCTGAGAAAAATAT 472 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAA-GGAGCGGGACTTTGTATCAA 127697 ||| || ||||| || || ||| || | ||| ||||| | || || ||| | ||| | Sbjct 471 CCCTTCAACACATGCAAAACCAACAAGCCTCTCCGCAAATGAAGTGGAACTGTTAATCCA 412 Query 127698 AC 127699 || Sbjct 411 AC 410 >seq20510 Length=2578 Score = 104 bits (114), Expect = 3e-17 Identities = 219/321 (68%), Gaps = 12/321 (4%) Strand=Plus/Plus Query 12752 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAA 12811 ||| || || || ||||||| ||| || || | || || |||||||| || ||||| Sbjct 1254 GTTGGTTGCTGCAATGACAATGATTCCAGTATTACCCTCAAATCCATCCATTTCTGTCAA 1313 Query 12812 GAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA---CCCGCACTGCG 12868 ||||| || | ||| ||||| | |||||||||| | |||| || |||| || Sbjct 1314 AAGTTGGTTAAGGGTCTGTTCCCTTTCATCATTCCCTCC---ACCAATTCCAGCACCCCG 1370 Query 12869 TTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGC 12928 |||| | || || || ||||||||||||| ||||| ||||| || ||| || ||| Sbjct 1371 TTGCCTCCCCACAGCATCAATTTCGTCAACAAAAACAATACAAGGAGCATTCTCTTTGGC 1430 Query 12929 AACTTC--AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAA 12986 |||| || | ||| || |||| ||||| | ||| ||||||||||| ||||| Sbjct 1431 --CTTCTTGAATAAATCACGAACTCGGGAAGCACCAATACCAACAAACATCTCAACAAAC 1488 Query 12987 TTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAG 13045 | | | | | |||| || || || || | |||||| || || || ||| | Sbjct 1489 TCAGAACCAG-AGATTGAGAAAAACGGAACACCAGCTTCACCAGCAATAGCCTTGGCTAA 1547 Query 13046 GAGGGTCTTCCCCGTCCCTGG 13066 || |||||||| ||||| || Sbjct 1548 TAGAGTCTTCCCAGTCCCCGG 1568 >seq25475 Length=2349 Score = 100 bits (110), Expect = 3e-16 Identities = 179/261 (69%), Gaps = 3/261 (1%) Strand=Plus/Plus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 || ||||| ||||| || || || || || || || || | |||||||| | ||| Sbjct 1548 TGAAGACCTTCGTCGCGTGAAATAAGCTCGTTTGAAAAAGTTAATCCTGGCATTAAACCG 1607 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 || || || | ||||||||||||||| || || || || || || || || || || Sbjct 1608 CGTTTTTTGAGCCAGAAAATCGCACAGAAACTACCTGAAAAAAATATACCTTCAACGCAA 1667 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCC 127711 || || || | | | ||| || || | ||| | ||| | ||| ||||||||| Sbjct 1668 GCAAATGCTACAATCCTCTCAGCGAATGTATCAGAC---GAATCGATCCATTTCATCGCC 1724 Query 127712 CACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTT 127771 || | ||||||||| | |||||||| | |||| ||||| | ||| | ||||| Sbjct 1725 CATTCCGCCTTTTTCGCAATACATGGAATCGTCTCAATCGCGTGAAACAAACGATTCTTC 1784 Query 127772 TCTGATGGATCTTTGATGTAC 127792 |||| || ||||||||| ||| Sbjct 1785 TCTGCTGAATCTTTGATATAC 1805 >seq17518 Length=2997 Score = 93.3 bits (102), Expect = 5e-14 Identities = 372/574 (65%), Gaps = 19/574 (3%) Strand=Plus/Minus Query 116431 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 116490 || ||||| || || |||||||| | ||||| | |||||||| || || || Sbjct 1618 GCAATTGATGCAAGGTTACACACGGCAGTCTCTGTTGGACTTGTGTACTCAATTATCTCA 1559 Query 116491 GTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGAT--TTGACTTTG-TGTTA 116547 || |||| ||||| |||||| ||||| ||| | |||| | ||| ||| | || Sbjct 1558 GTGCACAGGTTTGATGACTTAATTGTGCC-AAGAT--TTTGCTGGTTGCTTTTCCTATTG 1502 Query 116548 CACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCC 116607 || |||||||| | ||||| || || | || || || | || ||||| | ||| || Sbjct 1501 CAAGCATCCTTAAAAAGCATGTAAGGATTTCCAGTTTCTATCTGTGACTTCAAAATTGCA 1442 Query 116608 TTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCC--CTCCTCCTCGTACTTTG 116665 ||| | | ||| | ||| || ||| || ||| | || |||| | Sbjct 1441 AACCAGAGACTTTGTGCTTGAACAACCTTCTTTGCTTTTCCAGCTCTT--TCATACTGGG 1384 Query 116666 TGTAGAGGGCCTCAAACTCTTCACCC--ACAGCCTCTGAGAGCCCTGGTGCCTTATCTGG 116723 |||| || |||| | ||||||||| |||| |||| | || || |||| || || Sbjct 1383 TGTACAGATTCTCATATTCTTCACCCCAACAG--TCTGCCAAACCAGGGGCCTCATTGGG 1326 Query 116724 ACAGAAGAGAGACCATTGACCACC-CTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCC 116782 || || || ||||| | |||| |||| ||| | | ||| || || || || | || Sbjct 1325 GCAAAACAGGGACCAATCACCATTGCTCCG-AACTCTTTCCATAAAAAGATCAGGCACCC 1267 Query 116783 AGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACT 116842 | || || | || | ||| ||| || |||||| | || || || | ||||| Sbjct 1266 AAAGGGCATAAAATAAATCTCGAGCACGCTGTTCTTCCTTTCCGTGGTTTATTTTCAACT 1207 Query 116843 CCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGC 116902 |||| || || | | ||| || ||||| ||||||| ||| || || | | || || | Sbjct 1206 CCAAGAATTCAAATACATCAGCATGCCATGGTTCCAAGTATACAGCAAAAGCACCTTTTC 1147 Query 116903 GA---CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAA 116959 | || |||| | ||||| | || || | || || || || |||||||||| Sbjct 1146 TCTTGCCTCCTCCCTGATCAACATATCGGGCAGTGTCATTGAACACACGCAGCATTGGAA 1087 Query 116960 TGATACCATCAGATTGGCCATTTGTCCCCCGAAT 116993 ||||||||| ||| |||||||| || ||||| Sbjct 1086 TGATACCATTAGACGTCCCATTTGTTCCACGAAT 1053 >seq17517 Length=2996 Score = 93.3 bits (102), Expect = 5e-14 Identities = 372/574 (65%), Gaps = 19/574 (3%) Strand=Plus/Minus Query 116431 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 116490 || ||||| || || |||||||| | ||||| | |||||||| || || || Sbjct 1617 GCAATTGATGCAAGGTTACACACGGCAGTCTCTGTTGGACTTGTGTACTCAATTATCTCA 1558 Query 116491 GTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGAT--TTGACTTTG-TGTTA 116547 || |||| ||||| |||||| ||||| ||| | |||| | ||| ||| | || Sbjct 1557 GTGCACAGGTTTGATGACTTAATTGTGCC-AAGAT--TTTGCTGGTTGCTTTTCCTATTG 1501 Query 116548 CACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCC 116607 || |||||||| | ||||| || || | || || || | || ||||| | ||| || Sbjct 1500 CAAGCATCCTTAAAAAGCATGTAAGGATTTCCAGTTTCTATCTGTGACTTCAAAATTGCA 1441 Query 116608 TTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCC--CTCCTCCTCGTACTTTG 116665 ||| | | ||| | ||| || ||| || ||| | || |||| | Sbjct 1440 AACCAGAGACTTTGTGCTTGAACAACCTTCTTTGCTTTTCCAGCTCTT--TCATACTGGG 1383 Query 116666 TGTAGAGGGCCTCAAACTCTTCACCC--ACAGCCTCTGAGAGCCCTGGTGCCTTATCTGG 116723 |||| || |||| | ||||||||| |||| |||| | || || |||| || || Sbjct 1382 TGTACAGATTCTCATATTCTTCACCCCAACAG--TCTGCCAAACCAGGGGCCTCATTGGG 1325 Query 116724 ACAGAAGAGAGACCATTGACCACC-CTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCC 116782 || || || ||||| | |||| |||| ||| | | ||| || || || || | || Sbjct 1324 GCAAAACAGGGACCAATCACCATTGCTCCG-AACTCTTTCCATAAAAAGATCAGGCACCC 1266 Query 116783 AGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACT 116842 | || || | || | ||| ||| || |||||| | || || || | ||||| Sbjct 1265 AAAGGGCATAAAATAAATCTCGAGCACGCTGTTCTTCCTTTCCGTGGTTTATTTTCAACT 1206 Query 116843 CCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGC 116902 |||| || || | | ||| || ||||| ||||||| ||| || || | | || || | Sbjct 1205 CCAAGAATTCAAATACATCAGCATGCCATGGTTCCAAGTATACAGCAAAAGCACCTTTTC 1146 Query 116903 GA---CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAA 116959 | || |||| | ||||| | || || | || || || || |||||||||| Sbjct 1145 TCTTGCCTCCTCCCTGATCAACATATCGGGCAGTGTCATTGAACACACGCAGCATTGGAA 1086 Query 116960 TGATACCATCAGATTGGCCATTTGTCCCCCGAAT 116993 ||||||||| ||| |||||||| || ||||| Sbjct 1085 TGATACCATTAGACGTCCCATTTGTTCCACGAAT 1052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612934652074440