Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq56144 105 8e-18 seq56143 105 8e-18 seq56145 102 9e-17 seq48696 93.3 5e-14 seq33732 84.2 2e-11 >seq56144 Length=1637 Score = 105 bits (116), Expect = 8e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || |||||||||| ||| || || |||| || | ||| || ||||| || Sbjct 1016 TCCTTCTGTATGTTGTAGTCGGCTAGGGTTCGGCCGTCTTCCAACTGTTTTCCGGCAAAG 1075 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| |||||||| |||| || | | ||||||||| ||||| || | ||| Sbjct 1076 ATCAACCGCTGCTGATCGGGAGGAATTCCCTCCTTGTCTTGAATCTTAGCTTTCA-CGTT 1134 Query 46523 GCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| ||||| || || | || |||||||| || || || ||||| || Sbjct 1135 GTCGATGGTGTCGGAGGATTCAACCTCTAGGGTTATGGTTTTACCGGTTAGGGTTTTCAC 1194 Query 46582 AAAGATTTGCAT 46593 |||||||||||| Sbjct 1195 AAAGATTTGCAT 1206 Score = 102 bits (112), Expect = 9e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||| | ||| ||| || |||||||| || || | ||||| | | |||| || Sbjct 770 ACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATCCGCAAGAGTTCTCCCGTCCTCC 829 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||| || || || ||||| ||||| || || | || | | || |||||| | Sbjct 830 AGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGGAATTCCTTCTTTGTCCTGG 889 Query 46505 ATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||| | ||| | | | ||||| ||||| || |||| ||||||||||| Sbjct 890 ATCTTCGCCTTCA-CGTTGTCGATTGTGTCCGAGGATTCAACCTCCAGTGTGATGGTTTT 948 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || ||||| || ||||||||||| Sbjct 949 TCCGGTTAGGGTTTTCACGAAGATTTGCAT 978 >seq56143 Length=1408 Score = 105 bits (116), Expect = 8e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||| | ||| ||| || |||||||| || || | ||||| | | |||| || Sbjct 770 ACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATCCGCAAGAGTTCTCCCGTCCTCC 829 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||| || || || ||||| ||||| || || | || | | || |||||| | Sbjct 830 AGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGGAATTCCTTCTTTGTCCTGG 889 Query 46505 ATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||| | ||| | | | ||||| ||||| || |||| ||||||||||| Sbjct 890 ATCTTCGCCTTCA-CGTTGTCGATTGTGTCCGAGGATTCAACCTCCAGTGTGATGGTTTT 948 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || |||||||| || ||||||||||| Sbjct 949 TCCAGTTAGCGTTTTGACGAAGATTTGCAT 978 >seq56145 Length=1576 Score = 102 bits (112), Expect = 9e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||| | ||| ||| || |||||||| || || | ||||| | | |||| || Sbjct 770 ACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATCCGCAAGAGTTCTCCCGTCCTCC 829 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||| || || || ||||| ||||| || || | || | | || |||||| | Sbjct 830 AGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGGAATTCCTTCTTTGTCCTGG 889 Query 46505 ATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||| | ||| | | | ||||| ||||| || |||| ||||||||||| Sbjct 890 ATCTTCGCCTTCA-CGTTGTCGATTGTGTCCGAGGATTCAACCTCCAGTGTGATGGTTTT 948 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || ||||| || ||||||||||| Sbjct 949 TCCGGTTAGGGTTTTCACGAAGATTTGCAT 978 >seq48696 Length=1151 Score = 93.3 bits (102), Expect = 5e-14 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | ||||| ||| || || | || |||||| ||||||||||| || | Sbjct 532 GCCACCCCTCAGACGCAGCACAAGGTGAAGGGTCGACTCCTTCTGGATATTGTAATCAGC 473 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 ||||| | |||| || |||||||| || || || ||||| | |||||| || | || Sbjct 472 AAGAGTCCTTCCGTCTTCCAGCTGCTTACCCGCAAAGATCAACCTCTGCTGATCCGGAGG 413 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATT 46541 | | ||||| ||| |||||| ||| | ||| | | | || || ||| | Sbjct 412 GATTCCTTCCTTATCCTGGATCTTAGCCTTCA-CGTTGTCGATGGTATCAGAACTC---T 357 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || | ||||||||||| || || ||||| ||||||||||| ||||| Sbjct 356 CAACCTCGAGGGTGATGGTTTTCCCGGTGAGCGTCTTAACAAAGATCTGCAT 305 >seq33732 Length=802 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||||||| ||||| | || || || ||||| ||||| |||| | ||| | | Sbjct 693 CGCAACACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAATCGGCCAAAGTTCTGCCA 634 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || |||||||| ||||| || || || | | ||| ||||| | || | || ||| ||| Sbjct 633 TCTTCGAGCTGTTTGCCAGCAAAGATGAGCCTCTGTTGGTCCGGTGGAATGCCCTCTTTG 574 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCG---CTCGATTCCACATCCACCGTG 46555 ||| |||||| ||||| | | | ||||| ||| ||||| || | || Sbjct 573 TCCTGGATCTTGGCCTTGACATTGTCTATGGTGTCTGAACTC---TCCACCTCTAGTGTA 517 Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || || || || ||||| |||||||||||||| Sbjct 516 ATGGTCTTTCCTGTAAGGGTTTTGACAAAGATTTGCAT 479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564710898328680