Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq56145 104 2e-17 seq56144 104 2e-17 seq56143 104 2e-17 seq2803 95.1 8e-15 seq34025 91.5 1e-13 seq2802 91.5 1e-13 seq2801 84.2 2e-11 >seq56145 Length=1576 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||| || || ||||||||||| || | | |||| |||| || | |||||| || |||| Sbjct 559 TTCCTTCTGAATATTATAATCAGCAAGAGTGCGTCCATCTTCAAGTTGTTTACCAGCAAA 618 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 || | |||||| ||||| | |||| ||||| || || || || ||| | | Sbjct 619 GATAAGACGCTGTTGATCAGGTGGTATCCCTTCCTTATCCTGAATCTTGGCTTTCACATT 678 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | || || | || ||||| |||||||||||||| |||||||||||||| || || Sbjct 679 ATCAATAGTATCCGAACTCTCCACCTCCAAAGTAATTGTCTTACCCGTTAAAGTCTTGAC 738 Query 39708 GAAGATCTGCAT 39719 || |||||||| Sbjct 739 AAAAATCTGCAT 750 Score = 96.9 bits (106), Expect = 2e-15 Identities = 168/238 (71%), Gaps = 5/238 (2%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || |||| || || |||||||| | ||| ||||| || |||||||||| Sbjct 748 CATC-CCTCCACGCAGGCGAAGAACCAAATGGAGAGTAGACTCTTTCTGGATATTATAAT 806 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTG-TTTCCCGCCAAAAATTAAACGCTGCTGATCC 39606 | || | | | | || |||| ||| ||||||| |||| || || ||||| |||||| Sbjct 807 CCGCAAGAGTTCTCCCGTCCTCCAGTTGCTTTCCCG-CAAAGATCAATCGCTGTTGATCC 865 Query 39607 GAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCT 39665 | || | ||||||||||| || || || | ||| | | | |||||| | | Sbjct 866 GGAGGAATTCCTTCTTTGTCCTGGATCTTCGCCTTCA-CGTTGTCGATTGTGTCCGAGGA 924 Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCG 39723 ||| || |||| || || ||||| || |||| ||||| |||||||| |||||| || Sbjct 925 TTCAACCTCCAGTGTGATGGTTTTTCCGGTTAGGGTTTTCACGAAGATTTGCATGCCG 982 >seq56144 Length=1637 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||| || || ||||||||||| || | | |||| |||| || | |||||| || |||| Sbjct 559 TTCCTTCTGAATATTATAATCAGCAAGAGTGCGTCCATCTTCAAGTTGTTTACCAGCAAA 618 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 || | |||||| ||||| | |||| ||||| || || || || ||| | | Sbjct 619 GATAAGACGCTGTTGATCAGGTGGTATCCCTTCCTTATCCTGAATCTTGGCTTTCACATT 678 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | || || | || ||||| |||||||||||||| |||||||||||||| || || Sbjct 679 ATCAATAGTATCCGAACTCTCCACCTCCAAAGTAATTGTCTTACCCGTTAAAGTCTTGAC 738 Query 39708 GAAGATCTGCAT 39719 || |||||||| Sbjct 739 AAAAATCTGCAT 750 Score = 96.9 bits (106), Expect = 2e-15 Identities = 168/238 (71%), Gaps = 5/238 (2%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || |||| || || |||||||| | ||| ||||| || |||||||||| Sbjct 748 CATC-CCTCCACGCAGGCGAAGAACCAAATGGAGAGTAGACTCTTTCTGGATATTATAAT 806 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTG-TTTCCCGCCAAAAATTAAACGCTGCTGATCC 39606 | || | | | | || |||| ||| ||||||| |||| || || ||||| |||||| Sbjct 807 CCGCAAGAGTTCTCCCGTCCTCCAGTTGCTTTCCCG-CAAAGATCAATCGCTGTTGATCC 865 Query 39607 GAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCT 39665 | || | ||||||||||| || || || | ||| | | | |||||| | | Sbjct 866 GGAGGAATTCCTTCTTTGTCCTGGATCTTCGCCTTCA-CGTTGTCGATTGTGTCCGAGGA 924 Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCG 39723 ||| || |||| || || ||||| || |||| ||||| |||||||| |||||| || Sbjct 925 TTCAACCTCCAGTGTGATGGTTTTTCCGGTTAGGGTTTTCACGAAGATTTGCATGCCG 982 >seq56143 Length=1408 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||| || || ||||||||||| || | | |||| |||| || | |||||| || |||| Sbjct 559 TTCCTTCTGAATATTATAATCAGCAAGAGTGCGTCCATCTTCAAGTTGTTTACCAGCAAA 618 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 || | |||||| ||||| | |||| ||||| || || || || ||| | | Sbjct 619 GATAAGACGCTGTTGATCAGGTGGTATCCCTTCCTTATCCTGAATCTTGGCTTTCACATT 678 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | || || | || ||||| |||||||||||||| |||||||||||||| || || Sbjct 679 ATCAATAGTATCCGAACTCTCCACCTCCAAAGTAATTGTCTTACCCGTTAAAGTCTTGAC 738 Query 39708 GAAGATCTGCAT 39719 || |||||||| Sbjct 739 AAAAATCTGCAT 750 Score = 95.1 bits (104), Expect = 8e-15 Identities = 166/235 (71%), Gaps = 5/235 (2%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || |||| || || |||||||| | ||| ||||| || |||||||||| Sbjct 748 CATC-CCTCCACGCAGGCGAAGAACCAAATGGAGAGTAGACTCTTTCTGGATATTATAAT 806 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTG-TTTCCCGCCAAAAATTAAACGCTGCTGATCC 39606 | || | | | | || |||| ||| ||||||| |||| || || ||||| |||||| Sbjct 807 CCGCAAGAGTTCTCCCGTCCTCCAGTTGCTTTCCCG-CAAAGATCAATCGCTGTTGATCC 865 Query 39607 GAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCT 39665 | || | ||||||||||| || || || | ||| | | | |||||| | | Sbjct 866 GGAGGAATTCCTTCTTTGTCCTGGATCTTCGCCTTCA-CGTTGTCGATTGTGTCCGAGGA 924 Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||| || |||| || || ||||| || |||| ||||| |||||||| |||||| Sbjct 925 TTCAACCTCCAGTGTGATGGTTTTTCCAGTTAGCGTTTTGACGAAGATTTGCATG 979 >seq2803 Length=533 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||| ||| || || | ||||| ||| ||| || |||||||||||||| || Sbjct 194 GCCACCACGCAGACGAAGAACAAGATGCAGAGTAGATTCCTTCTGTATATTATAATCAGC 253 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || | || |||| |||||||| || || ||||||||| | |||||| || | || Sbjct 254 CAGAGTACGACCATCCTCCAATTGCTTACCAGCAAAAATTAGCCTCTGCTGGTCTGGAGG 313 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGT-TTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | || |||||||| | | |||| || || | | | | ||| || | ||||| | Sbjct 314 AATTCCCTCTTTGTC-CTGAATTTTAGTCTTCACATTATCAATTGTATCAGAACTTTCTA 372 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||||||| || || || || || | || || || || || ||||| Sbjct 373 CCTCCAAAGTTATGGTCTTTCCGGTAAGGGTCTTGACAAAAATTTGCAT 421 >seq34025 Length=456 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 |||| || | ||| | ||| |||||| || || || |||||||||||| | || Sbjct 347 CGCAACACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAATCGGCCAAAGTTCTGCCA 288 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | ||||| || |||| || || | ||||||||| | || | || || ||| Sbjct 287 TCTTCGAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCCTCCTTG 228 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || ||||||| || | | | | ||||||| ||||| || || || ||||| Sbjct 227 TCTTGTATTTTTGCCTTCACGTTATCAATGGTGTCTGAACTTTCTACCTCTAAGGTAATG 168 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || ||||| || |||||||||||||| Sbjct 167 GTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 133 >seq2802 Length=1024 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || || | ||||| ||| ||| || |||||||||||||| || Sbjct 685 GCCACCGCGAAGACGAAGAACAAGATGCAGAGTAGATTCCTTCTGTATATTATAATCAGC 744 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || | || |||| |||||||| || || ||||||||| | |||||| || | || Sbjct 745 CAGAGTACGACCATCCTCCAATTGCTTACCAGCAAAAATTAGCCTCTGCTGGTCTGGAGG 804 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGT-TTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | || |||||||| | | |||| || || | | | | ||| || | ||||| | Sbjct 805 AATTCCCTCTTTGTC-CTGAATTTTAGTCTTCACATTATCAATTGTATCAGAACTTTCTA 863 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||||||| || || || || || | || || || || || ||||| Sbjct 864 CCTCCAAAGTTATGGTCTTTCCGGTAAGGGTCTTGACAAAAATTTGCAT 912 >seq2801 Length=469 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| || ||||| | || | |||| ||| || || || || ||||| || Sbjct 299 CCACCTCTCAATCGGAGTACAAGGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGCA 240 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| |||||||||||||| |||| || | | |||||||| | || Sbjct 239 AGGGTGCGACCATCTTCCAATTGTTTCCCAGCAAAGATAAGCCTTTGCTGATCAGGAGGA 180 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | ||||| || || ||||| ||| | ||| | ||| || || | || ||||| Sbjct 179 ATACCTTCCTTATCTTGGATTTTAGATTTCA-CGTTGTCTATGGTATCAGAACTCTCCAC 121 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||| || ||||| || || || ||||| || ||||| ||||| Sbjct 120 CTCAAGAGTGATAGTTTTGCCGGTCAATGTTTTCACAAAGATTTGCAT 73 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347053526121347