Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq25475 136 5e-27 seq20510 136 5e-27 seq46009 129 7e-25 seq49566 104 3e-17 seq52253 87.8 2e-12 >seq25475 Length=2349 Score = 136 bits (150), Expect = 5e-27 Identities = 377/568 (66%), Gaps = 15/568 (3%) Strand=Plus/Minus Query 102059 GTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATG 102118 |||||| || ||| || |||||||| | | ||| | || || | || ||||||| Sbjct 1805 GTATATCAAAGATTCAGCAGAGAAGAATCGTTTGTTTCACGCGATTGAGACGATTCCATG 1746 Query 102119 TATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGC 102178 |||| || || ||||| ||||| ||||| ||| | ||| | ||| | | || || Sbjct 1745 TATTGCGAAAAAGGCGGAATGGGCGATGAAATGGATCGATTC---GTCTGATACATTCGC 1689 Query 102179 TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGC 102238 |||| | | | |||||||| || ||||| ||||| || || || ||| ||||| || Sbjct 1688 TGAGAGGATTGTAGCATTTGCTTGCGTTGAAGGTATATTTTTTTCAGGTAGTTTCTGTGC 1629 Query 102239 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 102298 |||| |||||||| || || ||| | |||||||| | || || ||||||||||| Sbjct 1628 GATTTTCTGGCTCAAAAAACGCGGTTTAATGCCAGGATTAACTTTTTCAAACGAGCTTAT 1569 Query 102299 CTCTCGTGACGAGGGACTCCACCAAGAGTTTGC--GGTGGAACTTTTCAAATTATTGCGT 102356 || || ||||| || || || || || || | | | |||| | |||||| Sbjct 1568 TTCACGCGACGAAGGTCTTCATTGCGATTTCGCTTGTTTG--CTTTACTCATTATTAAAA 1511 Query 102357 ATTAAAC-CAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAA 102415 | |||| || || ||| | || | ||||| || || |||||||| |||| Sbjct 1510 AAGAAACTCAGTGA-AGAGCGCGTGCAGACGATTGTGCGTGACGCGGTTGAGATCGAGAG 1452 Query 102416 GGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAGAT--G 102473 || || | | || || ||||| ||||| | | || ||||| ||| ||| | Sbjct 1451 GGAGTTTGTGTGCGACGCGCTTCCTTGCGCGTTGGTTGGGATGAACGGTGATTTGATGAG 1392 Query 102474 TCCGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGG-GTGCCTCCAAT 102532 | || |||||||||||||| ||||||| |||||| | || | ||| ||| || Sbjct 1391 TACG--TATATTGAGTATGTTGCTGATAGGTTGTTGGGGGAGCTTGGGTGTG-GGAAGAT 1335 Query 102533 TTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAA 102592 || || | |||||| ||||| | ||||| ||| || | |||||||| || Sbjct 1334 TTATAATGTGACGAATCCGTTTGATTGGATGGATCTGATTTCGCTTCAGGGGAAGACCAA 1275 Query 102593 CTTCTTCGAAAAGAGGGTTGGGGACTAT 102620 ||| || || ||| | ||||| || ||| Sbjct 1274 CTTTTTTGAGAAGCGCGTTGGAGAGTAT 1247 >seq20510 Length=2578 Score = 136 bits (150), Expect = 5e-27 Identities = 311/462 (67%), Gaps = 12/462 (3%) Strand=Plus/Plus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAA 15976 |||||| || || | | || ||||| || ||||||| || || || | ||||| Sbjct 1236 ATCAAGAATGTCCGCCCTGTTGGTTGCTGCAATGACAATGATTCCAGTATTACCCTCAAA 1295 Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036 |||||||| ||||||||||| ||||||| || ||||||| |||||||||| || Sbjct 1296 TCCATCCATTTCTGTCAAAAGTTGGTTAAGGGTCTGTTCCCTTTCATCATTCCCT---CC 1352 Query 16037 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 |||| ||||||| |||||| | ||||| |||||||| || |||| || || || || Sbjct 1353 ACCAATTCCAGCACCCCGTTGCCTCCCCACAGCATCAATTTCGTCAACAAAAACAATACA 1412 Query 16094 TGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 || ||| || || |||| || | ||| || || || || || | |||| Sbjct 1413 AGGAGCATTCTCTTTGGC--CTTCTTGAATAAATCACGAACTCGGGAAGCACCAATACCA 1470 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 16210 ||||||||||| ||||| | | | | | |||| || || || ||| || |||||| Sbjct 1471 ACAAACATCTCAACAAACTCAGAACCAG-AGATTGAGAAAAACGGAACACCAGCTTCACC 1529 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 ||||| || ||| | |||||||| || || || || ||| | || || | || Sbjct 1530 AGCAATAGCCTTGGCTAATAGAGTCTTCCCAGTCCCCGGGGGACCAACAAGAAGAACTCC 1589 Query 16271 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 16330 | || || || ||| | || | | |||||||| | || ||||| ||||| | Sbjct 1590 TTTCGGTATGCGAGCTCCAATAGCAGTGAACCTCTCAGGCTTTTTTAGAAACTCCACTAC 1649 Query 16331 CTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372 ||| | || || | ||||| | || | ||| ||||||| Sbjct 1650 CTCCACAAAATCCTGCTTGGCTTCATCTACCCCAGCAACATC 1691 >seq46009 Length=1074 Score = 129 bits (142), Expect = 7e-25 Identities = 451/692 (65%), Gaps = 13/692 (2%) Strand=Plus/Plus Query 101777 ACACCTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAATTGGACTGCTGAAGAGGTAGA 101836 ||| |||||||| | || || |||||| || ||| ||||| || ||||| ||||| Sbjct 39 ACAACTCTGGGAGATGTACAAAAAGGCTGAAGCCAGTTTCTGGACCGCCGAAGAAGTAGA 98 Query 101837 TCTCTCAAAGGATTTGGACGATTGGAAGACTCTAAATGAAAATGAAAAGAAATTCATAAA 101896 |||||| | ||| | | ||||| || | || || ||| | |||||| Sbjct 99 TCTCTCCTATGATGTACATCATTGGGCAACCTTGTCAGACTCCGAGAAGCACTTCATATC 158 Query 101897 ATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGTTTTTGAGAATATCAATAACAA 101956 | || |||| || || ||||| || |||||||| ||||| |||||| | | ||| Sbjct 159 ACACGTCCTTGCTTTTTTTGCAACATCTGATGGAATCGTTTTGGAGAATTTGGCTG-CAA 217 Query 101957 CTTTGCTGA-TGAGGTGCAATCCTCTGAAGCGAGATCTTTCTATGCGTATCA-ATGTCAT 102014 || |||| ||| || ||| | | || || | | ||||| | || ||| || || Sbjct 218 GGTTTCTGAATGACGTTCAAATCCCGGAGGCTCGGGCATTCTACGGGTTTCAGATAGCA- 276 Query 102015 AATGAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGT 102074 | || | | ||| |||| || ||| || | || | |||||||| ||| Sbjct 277 ATCGAGAATATTCATTCTGAGATGTATAGTTTGCTGTTGGAGACATATATTAAAGATTCA 336 Query 102075 GCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCG 102134 | |||||| | | | || | || || ||| |||| ||| || || ||| || Sbjct 337 GTCGAGAAGCATAAATTGTTCAATGCAATTGAAAATCTTCCTTGTGTTGCAAGGAAGGCT 396 Query 102135 GATTGGGCTATGAAGTGGTTTGATACAAAGTCGCG-TTCCTTTGCTGAGCGACTCTTCGC 102193 || ||||| ||| ||| ||| | ||| | ||| ||||| ||| | || | | Sbjct 397 GAATGGGCATTGA----GTTGGATTAACAGTTCCACTTCATTTGCGGAGAGGCTTGTTGG 452 Query 102194 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 102253 ||||| |||||||| || || || ||||| || |||||| || || | ||||| || Sbjct 453 TTTTGCATGTGTTGAAGGGATATTTTTCTCAGGAAGCTTCTGTGCCATATTCTGGCTTAA 512 Query 102254 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 ||| |||| || ||||||||||| ||||| || || || |||||| | |||||||| Sbjct 513 AAAGAGAGGACTAATGCCAGGTCTGACATTCTCAAATGAACTAATCTCTAGAGACGAGGG 572 Query 102314 ACTCCACCAAGAGTTTGCGGTGGA-ACTTTTCAAATTATTGCGTATTAAACCA-ACGACT 102371 || ||| || ||||| || | || | || || || | | || | | || || Sbjct 573 TCTTCACTGTGATTTTGC-TTGCATGCTATACAGCTTGTTACTGAGAAAGCTAGACTAC- 630 Query 102372 GAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAGGGATTCATATTGGAT 102431 ||| ||||| |||||| | ||||| ||||| ||||||| | || | | ||| Sbjct 631 GAGCGGGTTCATAATATTGTACACGAAGCTGTTGAAATTGAGACCGAGTTTGTCTGTGAT 690 Query 102432 GCCCTTCCATGCGCTCTCATCGGTATGAATTC 102463 || || || || ||| | || || ||||| || Sbjct 691 GCACTCCCTTGTGCTTTGATTGGCATGAACTC 722 >seq49566 Length=2637 Score = 104 bits (114), Expect = 3e-17 Identities = 152/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 |||||| | || || | ||| | ||| |||||| | ||| | |||||| || || Sbjct 1174 ATCAAACCTTCCAGGTCTAAGCAATGCGGAATCAAGAACATCGGGTCTATTCGTAGCAGC 1233 Query 15947 GATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAAT 16006 | |||| || ||||| | | ||| ||||||||||| ||||||||||| ||||| Sbjct 1234 CAAAACAATAACACCTGAATTACCAGAAAATCCATCCATCTCAGTCAAAAGCTGATTAAT 1293 Query 16007 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACG 16064 ||| || ||||| ||||||||| | || ||| ||||| | | || | || || Sbjct 1294 AGTCTGCTCCCGCTCATCATTCCC--GCCACCCATTCCAGCTCCTCTCTGTCTCCCAACC 1351 Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGT 16097 ||||||||||||||||| || || ||||| ||| Sbjct 1352 GCATCAATCTCATCAATAAACACAATGCAAGGT 1384 >seq52253 Length=2098 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/136 (76%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 184557 TTGGAATA--GGTGCAAATGATGTTGCCAATGCATTCGCAACATCAGTTGGATCAGGTGC 184614 |||||| | ||||| ||||||||||| |||||| | | ||| || |||||||| ||||| Sbjct 703 TTGGAACATTGGTGCTAATGATGTTGCAAATGCAATGGGAACTTCTGTTGGATCTGGTGC 762 Query 184615 TTTGAAAGTTAAGCACGCAGTG-CCACTCGCGGCTGTGTGTGAGTTTTCGGGGTCTCTGT 184673 |||| ||| ||| || ||| ||| || || |||| |||||||| || | ||| Sbjct 763 ATTGACTCTTAGGCAAGCTGTGTTGACT-GCTGCAGTGTTGGAGTTTTCTGGTGCATTGT 821 Query 184674 TTATGGGAAGTCATGT 184689 | ||||||| |||||| Sbjct 822 TGATGGGAACTCATGT 837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620163099914480