Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq20510 152 6e-32 seq46009 114 2e-20 seq49566 105 8e-18 >seq20510 Length=2578 Score = 152 bits (168), Expect = 6e-32 Identities = 312/460 (68%), Gaps = 8/460 (2%) Strand=Plus/Plus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 |||||| || || | | || || || || ||||||| || || || | | ||||| Sbjct 1236 ATCAAGAATGTCCGCCCTGTTGGTTGCTGCAATGACAATGATTCCAGTATTACCCTCAAA 1295 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 |||||||| ||||||||||||||||||| || ||||||| |||||||||| || Sbjct 1296 TCCATCCATTTCTGTCAAAAGTTGGTTAAGGGTCTGTTCCCTTTCATCATTCCCT---CC 1352 Query 9344 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 |||| ||||||| |||||| | ||||| |||||||| || |||| || |||||||| Sbjct 1353 ACCAATTCCAGCACCCCGTTGCCTCCCCACAGCATCAATTTCGTCAACAAAAACAATACA 1412 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 || ||| || ||| | | || | ||| ||||| | || || | |||||| Sbjct 1413 AGGAGCATTCTCTTTGGCCTTCTTGAATAAATCACGAACTCGGGAAGCACCAATACCAAC 1472 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9519 ||||||||| ||||| | | | | | |||| || || || ||| || |||||| | Sbjct 1473 AAACATCTCAACAAACTCAGAACCAG-AGATTGAGAAAAACGGAACACCAGCTTCACCAG 1531 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCC 9579 |||| || ||| | |||||||| || || || || ||| | || || | || Sbjct 1532 CAATAGCCTTGGCTAATAGAGTCTTCCCAGTCCCCGGGGGACCAACAAGAAGAACTCCTT 1591 Query 9580 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCT 9639 || || || ||| | || | | |||||||| | || ||||| ||||| | || Sbjct 1592 TCGGTATGCGAGCTCCAATAGCAGTGAACCTCTCAGGCTTTTTTAGAAACTCCACTACCT 1651 Query 9640 CTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 9679 | | || || | ||||| | || | ||| ||||||| Sbjct 1652 CCACAAAATCCTGCTTGGCTTCATCTACCCCAGCAACATC 1691 >seq46009 Length=1074 Score = 114 bits (126), Expect = 2e-20 Identities = 362/557 (65%), Gaps = 7/557 (1%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| |||||||| |||| || || |||||||||||||| || ||| Sbjct 590 GCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTGAGAATGTCAGACCT 531 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| || || | ||| || | ||| | || || ||||| || ||||| || || Sbjct 530 GGCATTAGTCCTCTCTTTTTAAGCCAGAATATGGCACAGAAGCTTCCTGAGAAAAATATC 471 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAA-GGAGCGAGACTTTGTGTCAAA 117452 || || ||||| ||||| ||| ||| | ||| || || | || | || ||| || Sbjct 470 CCTTCAACACATGCAAAACCAACAAGCCTCTCCGCAAATGAAGTGGAAC----TGTTAAT 415 Query 117453 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 117512 ||| ||| |||||||| |||||| | ||| ||| || | | ||| || || | || Sbjct 414 CCAACTCAATGCCCATTCAGCCTTCCTTGCAACACAAGGAAGATTTTCAATTGCATTGAA 355 Query 117513 TAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTC 117572 || | | ||| || | ||| ||||| ||| | || | || ||| | || Sbjct 354 CAATTTATGCTTCTCGACTGAATCTTTAATATATGTCTCCAACAGCAAACTATACATCTC 295 Query 117573 GCCATGAACCATTTCATTATGGCAT-TGATATGCGTAGAATGAGCGCGCTTCGCTTATCT 117631 ||||| | || | || || ||| | ||||||||| || || || || | Sbjct 294 AGAATGAATATTCTCGAT-TGCTATCTGAAACCCGTAGAATGCCCGAGCCTCCGGGATTT 236 Query 117632 GCACTTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAA 117691 | || |||| | ||| | | | |||||| ||||| |||||||| || |||| Sbjct 235 GAACGTCATTCAGAAACCTTGCAGCCAAATTCTCCAAAACGATTCCATCAGATGTTGCAA 176 Query 117692 AGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTCGT 117751 | || || |||| || |||||| | ||| || || || ||| ||| | | Sbjct 175 AAAAAGCAAGGACGTGTGATATGAAGTGCTTCTCGGAGTCTGACAAGGTTGCCCAATGAT 116 Query 117752 CAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCAATTGCTCATTTGAGCCTTTTTAT 117811 | ||| | ||| | ||| |||||||| || ||||| || || ||||||||| | Sbjct 115 GTACATCATAGGAGAGATCTACTTCTTCGGCGGTCCAGAAACTGGCTTCAGCCTTTTTGT 56 Query 117812 AGAGTTCCCAGAGTTGT 117828 | | |||||||||||| Sbjct 55 ACATCTCCCAGAGTTGT 39 >seq49566 Length=2637 Score = 105 bits (116), Expect = 8e-18 Identities = 195/284 (69%), Gaps = 4/284 (1%) Strand=Plus/Plus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| | || || | ||| | ||| |||||| | ||| | |||||| || || Sbjct 1174 ATCAAACCTTCCAGGTCTAAGCAATGCGGAATCAAGAACATCGGGTCTATTCGTAGCAGC 1233 Query 9254 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9313 | |||| || ||||| | | | ||| ||||||||||| |||||||| || ||||| Sbjct 1234 CAAAACAATAACACCTGAATTACCAGAAAATCCATCCATCTCAGTCAAAAGCTGATTAAT 1293 Query 9314 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACG 9371 ||| || ||||| ||||||||| | || ||| ||||| | | || | || || Sbjct 1294 AGTCTGCTCCCGCTCATCATTCCC--GCCACCCATTCCAGCTCCTCTCTGTCTCCCAACC 1351 Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431 ||||||||||||||||| || ||||| || ||| || || | ||||| | | Sbjct 1352 GCATCAATCTCATCAATAAACACAATGCAAGGTGCCTTGGACTTTGCCTTCTCAAACAAA 1411 Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 || | |||||| || || || || ||||||| ||||| || Sbjct 1412 TCTCTAACCCTAGAAGCACCAACTCCCACAAACAATTCCACGAA 1455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589430207793160