Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq63568 562 4e-155 seq65592 147 3e-30 seq67767 132 6e-26 seq47049 98.7 1e-15 >seq63568 Length=1222 Score = 562 bits (622), Expect = 4e-155 Identities = 726/997 (73%), Gaps = 4/997 (0%) Strand=Plus/Minus Query 179739 TGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 179798 |||| | |||||| | ||| ||||| || | ||||| || || | || ||||| Sbjct 1092 TGGGGTCGCTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTT 1033 Query 179799 GGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCAT 179857 || ||| ||||||| || || | ||| | |||||| |||| || || |||| ||||| Sbjct 1032 GGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCAT 974 Query 179858 CGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 179917 ||||| || || || || || ||||| || ||||| || || |||| || || | || Sbjct 973 TGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTA 914 Query 179918 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTT 179977 || ||||| || || |||||||| || ||||| |||| || || ||| | ||||| Sbjct 913 CGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATCGGTTTGCACTT 854 Query 179978 CTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCA 180037 || || || |||||||| ||||| |||| || ||| | || || |||||||||| | Sbjct 853 TTACCCGATATGGGAAGCTGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGA 794 Query 180038 ACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACT 180097 ||| | || | |||||| | |||| | | ||||||||||||||||||||||| Sbjct 793 ACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACT 734 Query 180098 TTCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTG 180156 | || ||| ||||||||||||| ||||| ||| || |||||||| ||||| ||||| | Sbjct 733 TAGTTTTCGTCTGGGTATGCGCCCTTGGAT-TGCTGTTGCATATTCAGCTCCCGTCGCAG 675 Query 180157 CAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGC 180216 | || |||| || ||| | |||| || | |||||||| || || || | |||| Sbjct 674 CTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCAGATGGTATGC 615 Query 180217 CCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCC 180276 | || || || ||||| || ||||||| ||| |||| || || || ||||| || || | Sbjct 614 CTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAGCATAATATTC 555 Query 180277 TGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCG 180336 | |||||||| || |||||| | || ||||| ||||| |||||||| || || ||| | Sbjct 554 TTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTG 495 Query 180337 CAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCC 180396 | ||||||||||| |||| || ||| || | | |||||||| |||| ||| || Sbjct 494 CTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTG 435 Query 180397 AGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATG 180456 || | ||||||| || |||||||| ||||| ||||| || || || ||||| || | Sbjct 434 CTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCTGCTCACG 375 Query 180457 GATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACT 180516 | || || || || |||||||||| ||||| |||||||| || || || | || | Sbjct 374 GTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGCTCTTTACATT 315 Query 180517 TCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCA 180576 ||||||| || || |||||||| || || |||||||| || || | || | ||||| | Sbjct 314 TCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGGTATCAGCACTA 255 Query 180577 TGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTG 180636 |||| ||||| | || |||||||| || ||||| || | ||||| |||||||||||| Sbjct 254 TGGCTTTCAATTTAAATGGTTTCAATTTTAACCAATCTGTAGTTGATAGTCAAGGTCGTG 195 Query 180637 TGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACG 180696 | | || || ||||| || | | ||||| ||| || ||||||||||||||||| | Sbjct 194 TAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATG 135 Query 180697 AGCGTAATGCTCACAACTTCCCACTTGACCTGGCAGC 180733 | ||||||||||| || ||||| || ||||| || || Sbjct 134 AACGTAATGCTCATAATTTCCCTCTAGACCTAGCTGC 98 >seq65592 Length=292 Score = 147 bits (162), Expect = 3e-30 Identities = 149/194 (77%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 182243 GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAA 182302 ||||| || || ||||| ||||| ||||||||||| || ||||||||| | ||| ||||| Sbjct 18 GGTCTGGCCCTGAACCTGCGTGCCTATGACTTTGTTTCTCAAGAAATCCGCGCAGCAGAA 77 Query 182303 GACCCAGAGTTCGAGACGTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCA 182362 || || || || ||||| |||||||| || || |||||||| || |||||| | ||||| Sbjct 78 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCG 137 Query 182363 TGGTTAGCACCAGTCGATCAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCC 182422 ||| | || | ||||| || ||||| ||| || | ||||||||||| || |||| Sbjct 138 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCA 197 Query 182423 AGAGGTAACGCACT 182436 | || ||||| || Sbjct 198 CGTGGAAACGCTCT 211 >seq67767 Length=213 Score = 132 bits (146), Expect = 6e-26 Identities = 158/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 181679 GATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCC 181738 ||||| ||| ||| ||| | || || || ||| ||||||| || || ||||| || Sbjct 3 GATTTTACCCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTTCACGGTGCT 62 Query 181739 TTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG-TCTAATCGGAATCCG 181797 |||| | || ||||||||| | | ||||||||||||||||| ||| || | | || Sbjct 63 TTCGGATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCA-ATTGCG 121 Query 181798 ACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGTCTCTGTATTTCTCAT 181857 || || ||||| || || || |||||||| |||||||| || || ||||| || || || Sbjct 122 GCCTTATAATGCAATCGCATTCTCCGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCTGAT 181 Query 181858 CTATCCTCTGGGACAATCCAGTTGGTTCTTTG 181889 ||||| ||||| || || |||||||||||| Sbjct 182 TTATCCACTGGGCCAGTCTGGTTGGTTCTTTG 213 >seq47049 Length=776 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 171907 TTCTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCT 171966 |||| ||| ||| || |||| || ||||| || || || ||| | || ||| | | Sbjct 463 TTCTTGACCATGCTGAAGAAGTTGGAATTGATCTCCCTTACTCATGCAGAGCTGGTTCTT 404 Query 171967 GTTCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCC 172026 |||| |||||||||||| ||| ||||| || ||||| || || ||||||| Sbjct 403 GTTCTTCATGTGCTGGTAAAGTTGTTGGTGGTGAAGTTGATCAATCTGATGGTTCTTTCC 344 Query 172027 TTGATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTA 172080 |||||||||| || || || | || || ||||| || |||||||||||||||| Sbjct 343 TTGATGATGACCAGATTGAAGGTGGTTTTGTTCTTACTTGTGTTGCTTATCCTA 290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 609827154816360