Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq63568 560 1e-154 seq65592 179 4e-40 seq67767 129 7e-25 seq70055 104 3e-17 >seq63568 Length=1222 Score = 560 bits (620), Expect = 1e-154 Identities = 707/978 (72%), Gaps = 2/978 (0%) Strand=Plus/Minus Query 167097 TGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCT 167156 ||| | ||||||||| | |||||||| || | || ||||| || ||| ||||||||||| Sbjct 1074 TGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 1015 Query 167157 ACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGA 167215 || || | | ||||| ||||| || || ||||| ||| | | ||| ||||| || || Sbjct 1014 ACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCAGTAGA 956 Query 167216 CATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTC 167275 || |||||||| || || || ||| |||| || || | || || ||||| || || || Sbjct 955 TATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTC 896 Query 167276 TGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGC 167335 |||||| || ||||| ||||| ||||| ||| | ||||| || || || |||||||| Sbjct 895 TGGTGCCATTATTCCTACTTCTGCGGCTATCGGTTTGCACTTTTACCCGATATGGGAAGC 836 Query 167336 AGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTT 167395 ||| || | || || ||||| |||||||||||||||| |||| | ||| | ||||| Sbjct 835 TGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTT 776 Query 167396 CCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTAT 167455 | | |||| | | || |||||||||||||||||||| || ||||| ||||| Sbjct 775 CTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTAT 716 Query 167456 GCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCT 167515 ||| || ||||| ||||||||| || ||||| ||||| || || |||| || ||| | Sbjct 715 GCGCCCTTGGATTGCTGTTGCATATTCAGCTCCCGTCGCAGCTGCTACTGCAGTTTTCTT 656 Query 167516 CGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTAC 167575 |||| || | |||||||| || || || | |||||||| || ||||||||||| Sbjct 655 GATCTACCCAATTGGTCAAGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTAC 596 Query 167576 ATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATAT 167635 ||||||| ||| |||| || || || ||||| || || || |||||||| || || || Sbjct 595 TTTCAACTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCACCCATTTCACAT 536 Query 167636 GCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGT 167695 | | || || ||||| ||||||||||| || || |||||||| ||||||||||| |||| Sbjct 535 GTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGT 476 Query 167696 TACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTT 167755 || ||| || | | |||||||| |||| ||| || || | ||||||| || Sbjct 475 AACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATT 416 Query 167756 CGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGAT 167815 |||||| || ||||| || ||||| || || |||||||| ||||| || || || |||| Sbjct 415 CGGTCAAGAGGAAGAAACCTATAATATTGTAGCTGCTCACGGTTATTTTGGCCGATTGAT 356 Query 167816 CTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGCC 167875 ||||||||| || |||||||| || ||||| | || |||||| | || || ||||| Sbjct 355 CTTCCAATATGCTAGTTTCAACAATTCTCGCTCTTTACATTTCTTCCTAGCTGCTTGGCC 296 Query 167876 TGTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAACCTGAACGG 167935 ||| || |||||||||| ||||| | || || Sbjct 295 TGTAGTAGGTATCTGGTTTACCGCGTTAGGTATCAGCACTATGGCTTTCAATTTAAATGG 236 Query 167936 TTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTACTTGGGCAGA 167995 |||||| || ||||| ||| | |||||||| ||| || | ||| ||||| || Sbjct 235 TTTCAATTTTAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGA 176 Query 167996 CGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTT 168055 | | ||||||||| || ||||||||||||||||| || ||||||||||| || || Sbjct 175 TATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTT 116 Query 168056 CCCTCTCGACCTTGCTGC 168073 |||||| ||||| ||||| Sbjct 115 CCCTCTAGACCTAGCTGC 98 >seq65592 Length=292 Score = 179 bits (198), Expect = 4e-40 Identities = 156/194 (80%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 169302 GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAA 169361 ||||| || || ||||| ||||| |||||||||||||| ||||| ||| | ||||||||| Sbjct 18 GGTCTGGCCCTGAACCTGCGTGCCTATGACTTTGTTTCTCAAGAAATCCGCGCAGCAGAA 77 Query 169362 GATCCAGAGTTTGAGACGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCA 169421 ||||| || |||||||| ||||||||||| || || ||||| ||||||||| ||||||| Sbjct 78 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCG 137 Query 169422 TGGTTAGCACCTATTGATCAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACTTCCC 169481 ||| | || || ||||| |||||||| ||| || | ||||||||||| || || || Sbjct 138 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCA 197 Query 169482 CGAGGTAATGCCCT 169495 || || || || || Sbjct 198 CGTGGAAACGCTCT 211 >seq67767 Length=213 Score = 129 bits (142), Expect = 7e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 168750 TGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATC 168809 ||||||||| | || || || ||| ||||||| || || ||||| ||||||| |||| Sbjct 15 TGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATA 74 Query 168810 GGTTTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCCTACAATGC 168868 ||||| ||| | ||||| |||||||| || || ||| || | | || || || ||||| Sbjct 75 GGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGGCCTTATAATGC 133 Query 168869 TATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGG 168928 || || ||||| ||||| || |||||||||||| ||||| || || || || ||||| Sbjct 134 AATCGCATTCTCCGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCTGATTTATCCACTGGG 193 Query 168929 TCAATCGAGTTGGTTTTT 168946 || || ||||||| || Sbjct 194 CCAGTCTGGTTGGTTCTT 211 >seq70055 Length=284 Score = 104 bits (114), Expect = 3e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554 ||||||||| | |||| ||||| |||||||| |||||||| || || | || ||| Sbjct 230 GATGACTGGTTACGGAGGGACCGTTTTGTTTTTGTGGGTTGGTCCGGTCTATTGCTCTTT 171 Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614 || || ||| |||| | || |||||| | || || || | || || || ||| Sbjct 170 CCTTGCGCCTATTTTGCCGTGGGGGGTTGGTTCACAGGTACCACCTTTGTAACTTCATGG 111 Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGTT 168674 |||||||| || ||||||||||||||| |||| || ||||| | ||||| ||||| Sbjct 110 TATACTCATGGATTGGCAAGTTCCTATTTGGAAGGTTGTAACTTCTTAACTGCAGCAGTC 51 Query 168675 AGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCC 168724 |||||| || || | | | || ||| | || | || |||||||| Sbjct 50 TCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTACTGTGGGGTCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560084819591600