Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq63568 600 1e-166 seq67767 143 3e-29 seq65592 136 5e-27 >seq63568 Length=1222 Score = 600 bits (664), Expect = 1e-166 Identities = 714/963 (74%), Gaps = 8/963 (1%) Strand=Plus/Minus Query 181821 AATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACC 181880 || ||||| || | || ||||||||||| |||||||||| || | ||| | ||||| Sbjct 1056 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 997 Query 181881 ATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGA 181939 ||||| || || | |||||| | || || ||||| || ||||| || ||||| || || Sbjct 996 -TCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 938 Query 181940 ACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATC 181999 || || |||| || || | || || ||||| || || |||||||| || | || | Sbjct 937 GCCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 878 Query 182000 CTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTG 182059 || || || ||| | ||||| ||||| || ||||||||||| || ||||||| || Sbjct 877 TTCTGCGGCTATCGGTTTGCACTTTTACCCGATATGGGAAGCTGCATCCGTTGATGAATG 818 Query 182060 GCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGC 182119 | | || || |||||||||| |||| ||||| | |||||| | | || | || || Sbjct 817 GTTATACAATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGG--TGTA-GC 761 Query 182120 CT---ACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTG 182176 | ||||||| ||||||||||||||| || || | |||||||| || ||||| Sbjct 760 TTGTTACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGCCCTTGGATTGC 701 Query 182177 TGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGG 182236 ||| ||||| || ||||| ||||| || || |||| || ||||| |||| || | || Sbjct 700 TGTTGCATATTCAGCTCCCGTCGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGG 641 Query 182237 TCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTT 182296 |||||| || || |||| ||||| || |||||||| || || ||||||| |||| | Sbjct 640 TCAAGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 581 Query 182297 GGTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGG 182356 || || || |||||||| || ||||||||||| || || |||||||| |||||||| || Sbjct 580 TGTATTTCAGGCTGAGCATAATATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGG 521 Query 182357 TGTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGT 182416 ||||||||| || || || || ||||| ||||||||||| ||||| || ||| | | Sbjct 520 TGTATTCGGCGGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGAT 461 Query 182417 CCGTGAGACGACTGAGCAAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGA 182476 | | || || || || | || || || | ||||||| ||||||||||| ||||| Sbjct 460 CAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGA 401 Query 182477 GACCTATAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATC 182536 |||||||| || || || || || || || || || || |||||||||||||| || Sbjct 400 AACCTATAATATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAG 341 Query 182537 ATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTG 182596 |||||||| || || || || || |||||||| ||||| |||||||| || || ||||| Sbjct 340 TTTCAACAATTCTCGCTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTG 281 Query 182597 GTTCACCGCACTTGGTGTCTCCACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCA 182656 ||| ||||| | ||| || ||| ||||| ||||| | || |||||||| || ||||| Sbjct 280 GTTTACCGCGTTAGGTATCAGCACTATGGCTTTCAATTTAAATGGTTTCAATTTTAACCA 221 Query 182657 GTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGC 182716 || | ||||| |||| |||||||| |||| || ||||| ||| | | |||||||| Sbjct 220 ATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGC 161 Query 182717 TGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTAGATCTTGC 182776 | ||||||||||||||||||||||| ||||| || || || ||||| ||||| || || Sbjct 160 TAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGC 101 Query 182777 TGC 182779 ||| Sbjct 100 TGC 98 >seq67767 Length=213 Score = 143 bits (158), Expect = 3e-29 Identities = 153/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 183445 CGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGTGCCTTTGCTCTC 183504 || ||||| ||| | || || || |||| |||||| || || |||||||| || | | Sbjct 12 CGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTA 71 Query 183505 ATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTATCCGTCCTTACAAT 183564 || ||||| ||| | || || |||||||||||||| | || | || ||||| ||| Sbjct 72 ATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGGCCTTATAAT 131 Query 183565 GCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTG 183624 || || || ||||| ||||| |||||||||||||| ||| ||||| || ||||||||| Sbjct 132 GCAATCGCATTCTCCGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCTGATTTATCCACTG 191 Query 183625 GGTCAGTCTTCATGGTTCTTTG 183646 || |||||| |||||||||| Sbjct 192 GGCCAGTCTGGTTGGTTCTTTG 213 >seq65592 Length=292 Score = 136 bits (150), Expect = 5e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 184000 GGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAA 184059 || || || || || || ||||| ||||| ||||| |||||| ||| | ||||||||| Sbjct 18 GGTCTGGCCCTGAACCTGCGTGCCTATGACTTTGTTTCTCAAGAAATCCGCGCAGCAGAA 77 Query 184060 GATCCAGAATTTGAGACGTTCTACACAAAGAACATACTTCTTAATGAAGGACTACGTGCA 184119 ||||| ||||||||||| |||||||| || || || || | || ||||| | ||||| Sbjct 78 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCG 137 Query 184120 TGGTTAGCACCTTCTGATCAACCACATGAGAATTTTATATTTCCAGAGGAGGTATTACCT 184179 ||| | || || ||||| || ||||| || ||||||| || |||||||| |||| Sbjct 138 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCA 197 Query 184180 AGAGGCAATGCTCTTTGATG 184199 | || || ||||||| ||| Sbjct 198 CGTGGAAACGCTCTTTAATG 217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611125142354200