Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq56144 107 1e-18 seq53415 95.1 8e-15 seq62831 91.5 1e-13 seq2804 91.5 1e-13 seq48696 86.0 4e-12 >seq56144 Length=1637 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| | ||| |||| | || |||| ||||||||||||||| Sbjct 1015 TTCCTTCTGTATGTTGTAGTCGGCTAGGGTTCGGCCGTCTTCCAACTGTTTTCCGGCAAA 1074 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | || ||||| || | || | ||||||||||| |||||| ||| ||| Sbjct 1075 GATCAACCGCTGCTGATCGGGAGGAATTCCCTCCTTGTCTTGAATCTTAGCTTTCACGTT 1134 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || || ||||| || | |||||||||||| || || || || ||||| Sbjct 1135 GTCGATGGTGTCGGAGGATTCAACCTCTAGGGTTATGGTTTTACCGGTTAGGGTTTTCAC 1194 Query 34970 AAAGATCTGCAT 34981 |||||| ||||| Sbjct 1195 AAAGATTTGCAT 1206 >seq53415 Length=940 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | || | || | || |||| ||| || ||||| || Sbjct 345 TCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCTTCCAACTGCTTCCCGGCGAAG 286 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| ||| | || | |||||||||||| ||||| |||||| Sbjct 285 ATGAGACGCTGCTGATCTGGAGGAATCCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTG 226 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | |||||| |||| |||||| || || ||||| || || ||||| Sbjct 225 TCGATGGTGTCGGAAGACTCAACCTCGAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACG 166 Query 34971 AAGATCTGCATATTCGTAGA 34990 ||||||||||| || || || Sbjct 165 AAGATCTGCATCTTGGTGGA 146 >seq62831 Length=874 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 34747 AATCAT--TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTT 34804 |||||| ||||||| || | ||||| |||||||||| || |||||| |||||||| Sbjct 145 AATCATGGTTCCTCCTCTGAGCCTCAGGACCAAGTGAAGCGTTGATTCTTTTTGAATGTT 86 Query 34805 ATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTG 34864 ||| || | ||| | || |||| |||||||| || |||||||| || | | ||||| Sbjct 85 ATAATCAGCAAGAGTGCGACCATCTTCCAGCTGCTTACCGGCAAAAATCAACCTCTGCTG 26 Query 34865 GTCTTGCGGCACCCCCTCCTTGTC 34888 ||| | || | || |||||||| Sbjct 25 GTCAGGAGGGATACCTTCCTTGTC 2 >seq2804 Length=712 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAA 34848 |||||||||||||| || || | |||| ||| |||| || |||||||| || |||| Sbjct 675 TCTTTCTGAATGTTGTAATCTGCTAAAG--TTCTGCCATCCTCAAGCTGTTTGCCAGCAA 618 Query 34849 ATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGG 34908 | || || | || ||||| | || | ||||| || || |||||| |||||| Sbjct 617 AGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTATCCTGAATCTTGGCTTTGACAT 558 Query 34909 ATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 | || | ||| | ||| || || | ||| ||||| ||||| |||||||| |||| Sbjct 557 TGTCAATGGTATCAGAGCTCTCGACCTCAAGGGTGATGGTCTTTCCAGTGAGAGTTTTCA 498 Query 34969 CAAAGATCTGCAT 34981 ||||||| ||||| Sbjct 497 CAAAGATTTGCAT 485 >seq48696 Length=1151 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| | ||| | || | || || |||||||||||||| || Sbjct 268 TTCCTTCTGGATGTTGTAGTCAGCAAGAGTACGACCGTCCTCAAGCTGTTTTCCGGCGAA 209 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || ||||||||||| | || | || |||||||| ||||| |||||| Sbjct 208 GATCAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTT 149 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | ||| ||| || |||| || ||||| ||||| ||||| || || || Sbjct 148 GTCGATGGTGTCAGAACTCTCGACCTCGAGAGTGATGGTCTTTCCGGTGAGGGTTTTAAC 89 Query 34970 AAAGATCTGCATATT 34984 || || ||||| || Sbjct 88 GAATATTTGCATCTT 74 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324338213756952