Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq17518 248 1e-60 seq17517 248 1e-60 seq46009 208 9e-49 >seq17518 Length=2997 Score = 248 bits (274), Expect = 1e-60 Identities = 617/929 (66%), Gaps = 22/929 (2%) Strand=Plus/Minus Query 47879 TGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTC 47938 ||| || ||||| || ||||| || || ||| ||||| | || || | ||||| || Sbjct 1619 TGCAATTGATGCAAGGTTACACACGGCAGTCTCTGTTGGACTTGTGTACTCAATTATCTC 1560 Query 47939 AGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACA 47998 || || || || | || || || || | |||||| || || | | || || Sbjct 1559 AGTGCACAGGTTTGATGACTTAATTGTGCCAAGATTTTGCTGGTTGCTTTTCCTATTGCA 1500 Query 47999 TGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGA-TTCAATGATAGATT 48057 || ||||| ||||||| |||| |||||||||||||||| || ||||| ||| Sbjct 1499 AGCATCCTTAAAAAGCATGTAAGGATTTCCAGTTTCTATCTGTGACTTCAAA-----ATT 1445 Query 48058 TCCAAACAGTCCTAGCCTTTAT-----AACAGC--TCTA-GCTTTATTATCATGTTCGTA 48109 | || ||| || |||| | |||| | ||| ||||| | | ||| || Sbjct 1444 GCAAACCAG----AGACTTTGTGCTTGAACAACCTTCTTTGCTTTTCCAGCTCTTTCATA 1389 Query 48110 TTTAGTATATAACTTCTCAAATTCATCCCCATACACATTAT-CTAACCCAGGACATTCAT 48168 | || || | |||||| |||| || || | ||| | | | || ||||| |||| Sbjct 1388 CTGGGTGTACAGATTCTCATATTCTTCACCCCA-ACAGTCTGCCAAACCAGGGGCCTCAT 1330 Query 48169 TAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTA 48228 | || || | || |||||||| ||| | ||||| |||||| | ||| || | Sbjct 1329 TGGGGCAAAACAGGGACCAATCACCATTGCTCCGAACTCTTTCCATAAAAAGATCAGGCA 1270 Query 48229 TCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTT-A 48287 |||||| || ||||||||| | || | ||||||| || || || |||| | Sbjct 1269 CCCAAAGGGCATAAAATAAATCTCGAGCACGCTGTTCTTCCTTTCCGTGGTTTATTTTCA 1210 Query 48288 AGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCT 48347 | | |||||| || | || |||||||||||||||||| || |||| || | ||||| Sbjct 1209 ACTCCAAGAAT-TCAAATACATCAGCATGCCATGGTTCCAAGTATACAGCAAAAGCACCT 1151 Query 48348 GGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATT 48407 || || ||||| ||||| | ||||| |||||| | || | || | | |||| Sbjct 1150 TTTCTCTTGCCTCCTCCCTGATCAACATATCGGGCAGTGTCATTGAACACACGCAGCATT 1091 Query 48408 GGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATA 48467 || | |||||||| || | ||||| ||||| ||| || || ||| || ||||| Sbjct 1090 GGAATGATACCATTAGACGTCCCATTTGTTCCACGAATGTAGCTGCCATATGCCCTTATG 1031 Query 48468 TTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGG 48527 ||| || |||| ||| || || || || |||| || | ||| ||| ||| | Sbjct 1030 TTATGAACAGAAACACCAATCCCTCCAGCAGATTTACTAATGACAGCGCACTCTTTCAAT 971 Query 48528 GTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATT 48587 ||||||||||| ||||| |||||||||||| ||||| || | || |||||| || Sbjct 970 GTATCATAAATCCCTTCAATACTATCATCTTTCATACATATCAAGAAGCAACTACTCAAC 911 Query 48588 TGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCT 48647 || || | ||| || | ||| || | |||||||| |||||| | |||||| ||| Sbjct 910 TGAGGCCTAGGAGTCCCGGCATTGAAAAGAGTTGGAGAAGCATGAGTGAACCATCTCTGA 851 Query 48648 GATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGAT 48707 || | ||| | ||| || | || | | || || ||||| | || || || | ||| Sbjct 850 GACATCAAATGATAAGTCTTAACAGCGGATTCAATATCATGCTTGTGAATCCCAACAGAA 791 Query 48708 ACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATAT 48767 || | ||||| ||||| |||||| |||||||||| | || | |||||| ||||| Sbjct 790 ACCCTCATTATCATATGTTGAGGCCTTTCAACAACAGTCCCATCAACTTTCAACAGATAA 731 Query 48768 GATTTTTCCAATGTTTTAAAACCAAAATA 48796 || | || | ||||| || ||||| || Sbjct 730 GACCTCTCAAGGGTTTTGAATCCAAAGTA 702 >seq17517 Length=2996 Score = 248 bits (274), Expect = 1e-60 Identities = 617/929 (66%), Gaps = 22/929 (2%) Strand=Plus/Minus Query 47879 TGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTC 47938 ||| || ||||| || ||||| || || ||| ||||| | || || | ||||| || Sbjct 1618 TGCAATTGATGCAAGGTTACACACGGCAGTCTCTGTTGGACTTGTGTACTCAATTATCTC 1559 Query 47939 AGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACA 47998 || || || || | || || || || | |||||| || || | | || || Sbjct 1558 AGTGCACAGGTTTGATGACTTAATTGTGCCAAGATTTTGCTGGTTGCTTTTCCTATTGCA 1499 Query 47999 TGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGA-TTCAATGATAGATT 48057 || ||||| ||||||| |||| |||||||||||||||| || ||||| ||| Sbjct 1498 AGCATCCTTAAAAAGCATGTAAGGATTTCCAGTTTCTATCTGTGACTTCAAA-----ATT 1444 Query 48058 TCCAAACAGTCCTAGCCTTTAT-----AACAGC--TCTA-GCTTTATTATCATGTTCGTA 48109 | || ||| || |||| | |||| | ||| ||||| | | ||| || Sbjct 1443 GCAAACCAG----AGACTTTGTGCTTGAACAACCTTCTTTGCTTTTCCAGCTCTTTCATA 1388 Query 48110 TTTAGTATATAACTTCTCAAATTCATCCCCATACACATTAT-CTAACCCAGGACATTCAT 48168 | || || | |||||| |||| || || | ||| | | | || ||||| |||| Sbjct 1387 CTGGGTGTACAGATTCTCATATTCTTCACCCCA-ACAGTCTGCCAAACCAGGGGCCTCAT 1329 Query 48169 TAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTA 48228 | || || | || |||||||| ||| | ||||| |||||| | ||| || | Sbjct 1328 TGGGGCAAAACAGGGACCAATCACCATTGCTCCGAACTCTTTCCATAAAAAGATCAGGCA 1269 Query 48229 TCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTT-A 48287 |||||| || ||||||||| | || | ||||||| || || || |||| | Sbjct 1268 CCCAAAGGGCATAAAATAAATCTCGAGCACGCTGTTCTTCCTTTCCGTGGTTTATTTTCA 1209 Query 48288 AGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCT 48347 | | |||||| || | || |||||||||||||||||| || |||| || | ||||| Sbjct 1208 ACTCCAAGAAT-TCAAATACATCAGCATGCCATGGTTCCAAGTATACAGCAAAAGCACCT 1150 Query 48348 GGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATT 48407 || || ||||| ||||| | ||||| |||||| | || | || | | |||| Sbjct 1149 TTTCTCTTGCCTCCTCCCTGATCAACATATCGGGCAGTGTCATTGAACACACGCAGCATT 1090 Query 48408 GGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATA 48467 || | |||||||| || | ||||| ||||| ||| || || ||| || ||||| Sbjct 1089 GGAATGATACCATTAGACGTCCCATTTGTTCCACGAATGTAGCTGCCATATGCCCTTATG 1030 Query 48468 TTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGG 48527 ||| || |||| ||| || || || || |||| || | ||| ||| ||| | Sbjct 1029 TTATGAACAGAAACACCAATCCCTCCAGCAGATTTACTAATGACAGCGCACTCTTTCAAT 970 Query 48528 GTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATT 48587 ||||||||||| ||||| |||||||||||| ||||| || | || |||||| || Sbjct 969 GTATCATAAATCCCTTCAATACTATCATCTTTCATACATATCAAGAAGCAACTACTCAAC 910 Query 48588 TGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCT 48647 || || | ||| || | ||| || | |||||||| |||||| | |||||| ||| Sbjct 909 TGAGGCCTAGGAGTCCCGGCATTGAAAAGAGTTGGAGAAGCATGAGTGAACCATCTCTGA 850 Query 48648 GATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGAT 48707 || | ||| | ||| || | || | | || || ||||| | || || || | ||| Sbjct 849 GACATCAAATGATAAGTCTTAACAGCGGATTCAATATCATGCTTGTGAATCCCAACAGAA 790 Query 48708 ACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATAT 48767 || | ||||| ||||| |||||| |||||||||| | || | |||||| ||||| Sbjct 789 ACCCTCATTATCATATGTTGAGGCCTTTCAACAACAGTCCCATCAACTTTCAACAGATAA 730 Query 48768 GATTTTTCCAATGTTTTAAAACCAAAATA 48796 || | || | ||||| || ||||| || Sbjct 729 GACCTCTCAAGGGTTTTGAATCCAAAGTA 701 >seq46009 Length=1074 Score = 208 bits (230), Expect = 9e-49 Identities = 383/555 (69%), Gaps = 11/555 (2%) Strand=Plus/Minus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||||||||| || || |||||||||||| || | |||||| || ||||| | | Sbjct 593 CAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 534 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 || ||||| |||||||| ||||| | ||||||||| | | || ||| || || ||| Sbjct 533 CCTGGCATTAGTCCTCTCTTTTTAAGCCAGAATATGGCACAGAAGCTTCCTGAGAAAAAT 474 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140 || ||||| || ||||||| |||| || | ||||| || | | | | | | | Sbjct 473 ATCCCTTCAACACATGCAAAACCAACAAGCC--TCTCCGCAAAT-GAAGTGGAACTGTTA 417 Query 19141 ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTA 19200 ||||| ||| |||||| ||||||||| || ||||| || | | || || | ||| Sbjct 416 ATCCAACTCAATGCCCATTCAGCCTTCCTTGCAACACAAGGAAGATTTTCAATTGCATTG 357 Query 19201 AATAGATACATAC-GCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACAT 19259 || | || || | ||| ||| |||||||| ||||| || | || ||||| ||||| Sbjct 356 AACA-ATTTATGCTTCTCGACTGAATCTTTAATATATGTCTCCAACAGCAAACTATACAT 298 Query 19260 TTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTAT 19319 || ||||||||||| || || || |||||||| ||||| || | || || | || Sbjct 297 CTCAGAATGAATATTCTCGATTGCTATCTGAAACCCGTAGAATGCCCGAGCCTCCGGGAT 238 Query 19320 CTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGC 19379 || || ||| | ||| ||| | ||||||| || ||| ||||||||| | ||| Sbjct 237 TTGAACGTCATTCAGAAACCTTGCAGCCAAATTCTCCAAAACGATTCCATCAGATGTTGC 178 Query 19380 AAAAAATGCTAATACATGTTTAATAAAATGTTTTTC---ATCTGAGGTTAATGTATTCCA 19436 |||||| || | || ||| || || || || || ||||| || || ||| Sbjct 177 AAAAAAAGCAAGGACGTGTGATATGAAGTGCTTCTCGGAGTCTGA---CAAGGTTGCCCA 121 Query 19437 ATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTT 19496 || || | ||| | || | |||||||||||| | ||||| ||| || || || || Sbjct 120 ATGATGTACATCATAGGAGAGATCTACTTCTTCGGCGGTCCAGAAACTGGCTTCAGCCTT 61 Query 19497 TTTATACATGTTCCA 19511 ||| ||||| | ||| Sbjct 60 TTTGTACATCTCCCA 46 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561584218988760