Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq46009 181 1e-40 seq25475 109 6e-19 >seq46009 Length=1074 Score = 181 bits (200), Expect = 1e-40 Identities = 393/581 (68%), Gaps = 9/581 (2%) Strand=Plus/Minus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || ||||||||||| || | ||| || |||||| || | |||||| || || || | Sbjct 593 CAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 534 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT-CCAGAAAAGAA 37294 |||||||||| ||||| ||||||| ||| ||||| || || ||| | || || || || Sbjct 533 CCTGGCATTAGTCCTCTCTTTTTAAGCCAGAATATGGCA-CAGAAGCTTCCTGAGAAAAA 475 Query 37295 AATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGA 37354 || |||||||| |||||| | ||||| | | | | ||| |||| | || Sbjct 474 TATCCCTTCAACACATGCAAAACCAACAAGCC-TCTCCGCAAA--TGAAGTGGAACTGTT 418 Query 37355 AATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTT 37414 |||||| | || ||| || ||||| | |||||| || |||||||||| || Sbjct 417 AATCCAACTCAATGCCCATTCAGCCTTCCTTGCAACACAAGGAAGATTTTCAATTGCATT 358 Query 37415 TAAGAGAAAGtttttttCTTCACT--ATCTGTTATATAAGTATCAATTAGTAAACTATAC 37472 || | | | | |||| ||| |||| | ||||| || || | || ||||||||| Sbjct 357 GAACA--ATTTATGCTTCTCGACTGAATCTTTAATATATGTCTCCAACAGCAAACTATAC 300 Query 37473 ATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGAT 37532 || ||||| |||||||| || || ||||||||||| || || || || ||| || | Sbjct 299 ATCTCAGAATGAATATTCTCGATTGCTATCTGAAACCCGTAGAATGCCCGAGCCTCCGGG 240 Query 37533 AATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCT 37592 | |||||| || || | |||||| ||| || || || ||| || |||||| | | Sbjct 239 ATTTGAACGTCATTCAGAAACCTTGCAGCCAAATTCTCCAAAACGATTCCATCAGATGTT 180 Query 37593 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAA 37652 ||||| |||||||| || | | ||| || || | || | ||| || || |||| Sbjct 179 GCAAAAAAAGCAAGGACGTGTGATATGAAGTGCTTCTCGGAGTCTGACAAGGTTGCCCAA 120 Query 37653 TCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCACGT 37712 | || | ||| | || | ||| ||||| || ||||||| ||||| || || | Sbjct 119 TGATGTACATCATAGGAGAGATCTACTTCTTCGGCGGTCCAGAAACTGGCTTCAGCCTTT 60 Query 37713 TTATACATCGTCCAAATATCATTATGTTGTATTGGAAATAT 37753 || |||||| ||| | | || | | | |||||||| || Sbjct 59 TTGTACATCTCCCAGAGTTGTTTGTATCGAATTGGAAACAT 19 >seq25475 Length=2349 Score = 109 bits (120), Expect = 6e-19 Identities = 231/344 (67%), Gaps = 3/344 (1%) Strand=Plus/Plus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 ||||| || ||||| ||||| | |||||| || | || | || || ||||| ||| Sbjct 1530 AAACAAGCGAAATCGCAATGAAGACCTTCGTCGCGTGAAATAAGCTCGTTTGAAAAAGTT 1589 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAG 37292 ||||||||||||||||| | |||||| | ||| || || || ||| || ||||| Sbjct 1590 AATCCTGGCATTAAACCGCGTTTTTTGAGCCAGAAAATCGCACAGAAACTACCTGAAAAA 1649 Query 37293 AAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCA 37352 || ||||||||||| ||||||||||||| | | |||| || | |||| Sbjct 1650 AATATACCTTCAACGCAAGCAAATGCTACAATCCTCTCAGCGAATGTATCAGACGAATC- 1708 Query 37353 GAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCT 37412 |||||||| | | ||| || |||||| || |||| ||| || ||||| || Sbjct 1709 --GATCCATTTCATCGCCCATTCCGCCTTTTTCGCAATACATGGAATCGTCTCAATCGCG 1766 Query 37413 TTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATAC 37472 | || | | || || ||| | |||| | ||||| | || | || | | |||| Sbjct 1767 TGAAACAAACGATTCTTCTCTGCTGAATCTTTGATATACGCCTCGAGGAGAAGAGAATAC 1826 Query 37473 ATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAA 37516 || || || || ||||| || || || ||||| || || || || Sbjct 1827 ATCTCTGAATGGATATTCTCGATTGCGATCTGGAATCCGTAGAA 1870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591764027750360