Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq56145 107 1e-18 seq56144 107 1e-18 seq56143 107 1e-18 seq62831 84.2 2e-11 seq53415 84.2 2e-11 >seq56145 Length=1576 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || |||||||| ||||||| ||| | || | || || | || ||||| ||||| Sbjct 560 TCCTTCTGAATATTATAATCAGCAAGAGTGCGTCCATCTTCAAGTTGTTTACCAGCAAAG 619 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || ||||||||||| | || | || ||||| || |||||| ||| ||| | Sbjct 620 ATAAGACGCTGTTGATCAGGTGGTATCCCTTCCTTATCCTGAATCTTGGCTTTCACATTA 679 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || ||||||||||| ||||| || || ||||| ||||| || ||| Sbjct 680 TCAATAGTATCCGAACTCTCCACCTCCAAAGTAATTGTCTTACCCGTTAAAGTCTTGACA 739 Query 48756 AAAATCTGCATC 48767 |||||||||||| Sbjct 740 AAAATCTGCATC 751 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || |||||| || ||||| ||||| | ||| ||| |||| ||| Sbjct 770 ACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATCCGCAAGAGTTCTCCCGTCCTCC 829 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||| || ||||| |||| |||||||||||||| |||| || || ||||| Sbjct 830 AGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGGAATTCCTTCTTTGTCCTGG 889 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || || | | | || || | || ||||||| || || |||||| Sbjct 890 ATCTTCGCCTTCACGTTGTCGATTGTGTCCGAGGATTCAACCTCCAGTGTGATGGTTTTT 949 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||||| || || || ||||| Sbjct 950 CCGGTTAGGGTTTTCACGAAGATTTGCAT 978 >seq56144 Length=1637 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || |||||||| ||||||| ||| | || | || || | || ||||| ||||| Sbjct 560 TCCTTCTGAATATTATAATCAGCAAGAGTGCGTCCATCTTCAAGTTGTTTACCAGCAAAG 619 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || ||||||||||| | || | || ||||| || |||||| ||| ||| | Sbjct 620 ATAAGACGCTGTTGATCAGGTGGTATCCCTTCCTTATCCTGAATCTTGGCTTTCACATTA 679 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || ||||||||||| ||||| || || ||||| ||||| || ||| Sbjct 680 TCAATAGTATCCGAACTCTCCACCTCCAAAGTAATTGTCTTACCCGTTAAAGTCTTGACA 739 Query 48756 AAAATCTGCATC 48767 |||||||||||| Sbjct 740 AAAATCTGCATC 751 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || |||||| || ||||| ||||| | ||| ||| |||| ||| Sbjct 770 ACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATCCGCAAGAGTTCTCCCGTCCTCC 829 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||| || ||||| |||| |||||||||||||| |||| || || ||||| Sbjct 830 AGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGGAATTCCTTCTTTGTCCTGG 889 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || || | | | || || | || ||||||| || || |||||| Sbjct 890 ATCTTCGCCTTCACGTTGTCGATTGTGTCCGAGGATTCAACCTCCAGTGTGATGGTTTTT 949 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||||| || || || ||||| Sbjct 950 CCGGTTAGGGTTTTCACGAAGATTTGCAT 978 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || | |||| || ||||| || || || || ||||| || | Sbjct 979 GCCGCCGCGGAGACGGAGTACCAGGTGGAGCGTTGATTCCTTCTGTATGTTGTAGTCGGC 1038 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| |||| |||| |||||||| || |||||||| |||| ||||| ||||| | || Sbjct 1039 TAGGGTTCGGCCGTCTTCCAACTGTTTTCCGGCAAAGATCAACCGCTGCTGATCGGGAGG 1098 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||||||||||| |||||| ||| || | | | || || | || || Sbjct 1099 AATTCCCTCCTTGTCTTGAATCTTAGCTTTCACGTTGTCGATGGTGTCGGAGGATTCAAC 1158 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | || || ||||| || || | ||||| ||||| || ||||| Sbjct 1159 CTCTAGGGTTATGGTTTTACCGGTTAGGGTTTTCACAAAGATTTGCAT 1206 >seq56143 Length=1408 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || |||||||| ||||||| ||| | || | || || | || ||||| ||||| Sbjct 560 TCCTTCTGAATATTATAATCAGCAAGAGTGCGTCCATCTTCAAGTTGTTTACCAGCAAAG 619 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || ||||||||||| | || | || ||||| || |||||| ||| ||| | Sbjct 620 ATAAGACGCTGTTGATCAGGTGGTATCCCTTCCTTATCCTGAATCTTGGCTTTCACATTA 679 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || ||||||||||| ||||| || || ||||| ||||| || ||| Sbjct 680 TCAATAGTATCCGAACTCTCCACCTCCAAAGTAATTGTCTTACCCGTTAAAGTCTTGACA 739 Query 48756 AAAATCTGCATC 48767 |||||||||||| Sbjct 740 AAAATCTGCATC 751 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || |||||| || ||||| ||||| | ||| ||| |||| ||| Sbjct 770 ACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATCCGCAAGAGTTCTCCCGTCCTCC 829 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||| || ||||| |||| |||||||||||||| |||| || || ||||| Sbjct 830 AGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGGAATTCCTTCTTTGTCCTGG 889 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || || | | | || || | || ||||||| || || |||||| Sbjct 890 ATCTTCGCCTTCACGTTGTCGATTGTGTCCGAGGATTCAACCTCCAGTGTGATGGTTTTT 949 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||||| || || || ||||| Sbjct 950 CCAGTTAGCGTTTTGACGAAGATTTGCAT 978 >seq62831 Length=874 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || |||| || ||||| || ||||| ||||||||||| || ||||||| Sbjct 135 CCTCCTCTGAGCCTCAGGACCAAGTGAAGCGTTGATTCTTTTTGAATGTTATAATCAGCA 76 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | ||| | || |||| ||||||||||||||| |||| | ||| || || | || Sbjct 75 AGAGTGCGACCATCTTCCAGCTGCTTACCGGCAAAAATCAACCTCTGCTGGTCAGGAGGG 16 Query 48660 ACGCCCTCCTTGTC 48673 | || |||||||| Sbjct 15 ATACCTTCCTTGTC 2 >seq53415 Length=940 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || ||||| || | ||| | || |||| ||||||||||| ||||| || Sbjct 346 CTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCTTCCAACTGCTTCCCGGCGAA 287 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| ||||| | |||| ||||||||||| ||||| || || Sbjct 286 GATGAGACGCTGCTGATCTGGAGGAATCCCCTCCTTGTCTTGGATCTTGGTCTTGACGTT 227 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || | ||| ||||| | || ||||| || ||||| | ||||| || Sbjct 226 GTCGATGGTGTCGGAAGACTCAACCTCGAGGGTTATCGTCTTCCCCGTTAGGGTTTTCAC 167 Query 48755 AAAAATCTGCATCGTG 48770 || ||||||||| || Sbjct 166 GAAGATCTGCATCTTG 151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380590982377857