Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq6481 113 1e-19 seq23695 105 2e-17 seq18803 102 2e-16 seq18802 102 2e-16 seq27040 87.8 4e-12 >seq6481 Length=2955 Score = 113 bits (124), Expect = 1e-19 Identities = 281/417 (67%), Gaps = 20/417 (5%) Strand=Plus/Plus Query 150404 GGTGAACCAGGTGTTGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAAT 150463 ||||| || |||||||| |||||| | ||||| ||| | || || | || | ||| Sbjct 745 GGTGAGCCGGGTGTTGGAAAAACAGCTGTTGTTGAAGGACTGGCTCAGAGAATAGTTAAA 804 Query 150464 GGTGATGTTCC-AG--ATTCTATGAAAGATGTTGAAATTCTTTCTTTGAATATGGGTGCA 150520 | |||||||| || ||| || |||||| | | || ||||| ||||||| ||| Sbjct 805 AGAGATGTTCCGAGCAATT---TGGCCGATGTTAAGTTAGTTGCTTTGGATATGGGCGCA 861 Query 150521 TTTACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGAACG--TGTAGACAATTTGCTAC 150578 || ||||||| |||||||| || ||||| ||||| | || || | ||| | Sbjct 862 TTAGTTGCTGGTGCTAAGTATATGGGAGAATTTGAAGAGAGGTTGAAGGCGGTTT--TGA 919 Query 150579 AAGAACTAAAAGAACGCGATG---ATGTTATTCTGTTCATCGATGAAATCCATACTATTA 150635 ||||| | |||| || | | |||||||| |||||||||||||| ||| | || Sbjct 920 AAGAAGTGGAAGATGCTGAAGGGAAGGTTATTCTTTTCATCGATGAAATTCATCTTGTTC 979 Query 150636 TGGGTGCTGGTGCGACTGGCGGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTC 150695 | ||||||||| |||| || | | ||||| |||| | || || ||| | Sbjct 980 TTGGTGCTGGTCGAACTGATGGAG---CGATGGATGCTGCCAATCTTTTCAAGCCTATGC 1036 Query 150696 TATCTCGCGGTGAAATTCGTGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACA 150755 | |||| || || || | ||| || |||||||| | |||||||| | ||| | Sbjct 1037 TTGCTCGTGGCCAACTTAGATGCATTGGGGCAACAACTCTCCATGAATATAGAAAATATG 1096 Query 150756 TTGAAAAAGATGCAGCACT--ACAGCGTCGTTTCATGAAGGTTGATATTGTTGAACC 150810 | ||||| ||||||||| | | || | |||||| ||||| || ||| |||||| Sbjct 1097 TGGAAAAGGATGCAGCATTTGAAAG-GAGGTTTCA-ACAGGTTTATGTTGCTGAACC 1151 >seq23695 Length=3319 Score = 105 bits (116), Expect = 2e-17 Identities = 312/474 (66%), Gaps = 14/474 (3%) Strand=Plus/Minus Query 150359 ATTCAGATTCTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTT 150418 || || ||||| ||| | | ||| || || ||| || | | ||||||| || |||||| Sbjct 2372 ATCCAAATTCTCTCTAGGAGAACAAAGAACAATCCTGTGCTGATTGGTGAGCCTGGTGTT 2313 Query 150419 GGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCC---A 150475 || || || ||| || ||| | || || | |||| | || |||||||| | Sbjct 2312 GGAAAGACTGCAATTTCGGAAGGACTTGCTCAGAGAATCGTGCAAGGAGATGTTCCTCAA 2253 Query 150476 GATTCTATGAAAGATGTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACT 150535 | || ||||| || | | | | |||| |||||||||| ||| |||||| | Sbjct 2252 GCTTTGATGAACC--GTAGGCTTATATCCCTTGA-TATGGGTGCACTTATTGCTGGAGCA 2196 Query 150536 AAGTATCGTGGTGAATTCGAAGAACGTGTAGACAATTTGCTACAAGAACTAAAAGAACGC 150595 || || || || ||||||||||| | | | | | || ||||| ||| |||| Sbjct 2195 AAATACCGGGGAGAATTCGAAGATAGGCTGAAAGCTGTTCTTAAAGAAGTAACAGAATCT 2136 Query 150596 GATGATGT---TATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACT 150652 |||| | ||| || ||||| ||||| || ||||| || | || || ||||| || Sbjct 2135 GATGGTCAAACTATCCTTTTCATTGATGAGATTCATACAGTTGTTGGAGCAGGTGCTACA 2076 Query 150653 GGCGGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATT 150712 || | || ||||| | | || | ||||| ||| || | | || || || Sbjct 2075 AATGGAG---CTATGGATGCGGGTAACCTCTTAAAGCCTATGCTTGGTAGAGGAGAGCTT 2019 Query 150713 CG-TGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGC 150771 || ||| || ||||| ||||| ||||||||||| || | || || ||||| |||| Sbjct 2018 CGGTGT-ATTGGTGCGACAACACTTGATGAATATCGGAAGTATATCGAGAAAGACCCAGC 1960 Query 150772 ACTACAGCGTCGTTTCATGAAGGTTGATATTGTTGAACCGACACTTGAAGAAAC 150825 |||| | ||||||||| | | || || ||| | |||| || ||||||| || Sbjct 1959 ACTAGAACGTCGTTTCCAGCAAGTATATGTTGATCAACCTACTGTTGAAGATAC 1906 >seq18803 Length=3255 Score = 102 bits (112), Expect = 2e-16 Identities = 340/514 (66%), Gaps = 25/514 (5%) Strand=Plus/Plus Query 150288 ACCTAACTGATCTTGC-AGCAGAAGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAA 150346 |||| ||||| ||||| || | || || ||||||||| | || ||||| || |||| Sbjct 913 ACCTGACTGAACTTGCTAGGCGC-GGAAAGCTTGATCCAGTCATAGGTCGAGATGATGAA 971 Query 150347 CTT-GATGATCTAATTCAGATTCTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGG 150405 || | | | || | ||||| | || | | ||| || || ||| | | |||| Sbjct 972 ATTCGGCGCTGTA-TCCAGATATTGTCGAGAAGAACAAAGAACAATCCAGTTATTATTGG 1030 Query 150406 TGAACCAGGTGTTGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGG 150465 |||||| ||||| || ||||| || | ||| ||||||||||| || || | ||| Sbjct 1031 TGAACCTGGTGTGGGGAAAACTGCTATTGCTGAAGGATTAGCACAGCGTATAGTGCGTGG 1090 Query 150466 TGATGTTCCAGATTCTATGA-----AAGATGTTGAAATTCTTTCTTTGAATATGGGTGCA 150520 ||||||||||| | ||| | || ||||| ||| ||| |||||||| || Sbjct 1091 AGATGTTCCAGAGCCATTGATGAACAGGAAGTTGA---TCTCCCTT--GATATGGGTTCA 1145 Query 150521 TTTACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGAACGTGTAGACA-ATTTGCTACA 150579 || ||||||| | |||| |||||| || ||||||||| | || || | | | || | Sbjct 1146 TTGCTTGCTGGTGCCAAGTTTCGTGGAGATTTCGAAGAAAG-GTTGAAAGCTGTCCTGAA 1204 Query 150580 AGAACTAAAAGAACGCGATG---ATGTTATTCTGTTCATCGATGAAATCCATACTATTAT 150636 ||| | | || | ||| | | ||| |||| || |||||||| || ||| || | Sbjct 1205 GGAAGTTACAGCATCAAATGGGCAAATAATTTTGTTTATTGATGAAATACACACTGTTGT 1264 Query 150637 GGGTGCTGGTGCGACTGGCGGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTCT 150696 ||||| || || || | ||| | ||||| | || |||| || || || Sbjct 1265 TGGTGCAGGAGCTAC---AAGTGGTGCAATGGATGCTGGAAACTTGTTGAAGCCAATGCT 1321 Query 150697 ATCTCGCGGTGAAATTCG-TGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACA 150755 | || ||| |||| ||| || || ||||| || | |||||||| | ||| ||| Sbjct 1322 TGGAAGGGGGGAACTTCGATGT-ATAGGAGCAACTACATTGAATGAATATAGAAAATACA 1380 Query 150756 TTGAAAAAGATGCAGCACTACAGCGTCG-TTTCA 150788 |||| || ||| | ||||| ||||| | ||||| Sbjct 1381 TTGAGAAGGATCCTGCACTTGAGCGTAGATTTCA 1414 >seq18802 Length=2818 Score = 102 bits (112), Expect = 2e-16 Identities = 340/514 (66%), Gaps = 25/514 (5%) Strand=Plus/Plus Query 150288 ACCTAACTGATCTTGC-AGCAGAAGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAA 150346 |||| ||||| ||||| || | || || ||||||||| | || ||||| || |||| Sbjct 476 ACCTGACTGAACTTGCTAGGCGC-GGAAAGCTTGATCCAGTCATAGGTCGAGATGATGAA 534 Query 150347 CTT-GATGATCTAATTCAGATTCTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGG 150405 || | | | || | ||||| | || | | ||| || || ||| | | |||| Sbjct 535 ATTCGGCGCTGTA-TCCAGATATTGTCGAGAAGAACAAAGAACAATCCAGTTATTATTGG 593 Query 150406 TGAACCAGGTGTTGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGG 150465 |||||| ||||| || ||||| || | ||| ||||||||||| || || | ||| Sbjct 594 TGAACCTGGTGTGGGGAAAACTGCTATTGCTGAAGGATTAGCACAGCGTATAGTGCGTGG 653 Query 150466 TGATGTTCCAGATTCTATGA-----AAGATGTTGAAATTCTTTCTTTGAATATGGGTGCA 150520 ||||||||||| | ||| | || ||||| ||| ||| |||||||| || Sbjct 654 AGATGTTCCAGAGCCATTGATGAACAGGAAGTTGA---TCTCCCTT--GATATGGGTTCA 708 Query 150521 TTTACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGAACGTGTAGACA-ATTTGCTACA 150579 || ||||||| | |||| |||||| || ||||||||| | || || | | | || | Sbjct 709 TTGCTTGCTGGTGCCAAGTTTCGTGGAGATTTCGAAGAAAG-GTTGAAAGCTGTCCTGAA 767 Query 150580 AGAACTAAAAGAACGCGATG---ATGTTATTCTGTTCATCGATGAAATCCATACTATTAT 150636 ||| | | || | ||| | | ||| |||| || |||||||| || ||| || | Sbjct 768 GGAAGTTACAGCATCAAATGGGCAAATAATTTTGTTTATTGATGAAATACACACTGTTGT 827 Query 150637 GGGTGCTGGTGCGACTGGCGGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTCT 150696 ||||| || || || | ||| | ||||| | || |||| || || || Sbjct 828 TGGTGCAGGAGCTAC---AAGTGGTGCAATGGATGCTGGAAACTTGTTGAAGCCAATGCT 884 Query 150697 ATCTCGCGGTGAAATTCG-TGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACA 150755 | || ||| |||| ||| || || ||||| || | |||||||| | ||| ||| Sbjct 885 TGGAAGGGGGGAACTTCGATGT-ATAGGAGCAACTACATTGAATGAATATAGAAAATACA 943 Query 150756 TTGAAAAAGATGCAGCACTACAGCGTCG-TTTCA 150788 |||| || ||| | ||||| ||||| | ||||| Sbjct 944 TTGAGAAGGATCCTGCACTTGAGCGTAGATTTCA 977 >seq27040 Length=3309 Score = 87.8 bits (96), Expect = 4e-12 Identities = 272/415 (66%), Gaps = 17/415 (4%) Strand=Plus/Plus Query 150380 ACCAAAAAGAATGGT-GCGTTAGTTGGTGAACCAGGTGTTGGTAAAACACAAATCGTTGA 150438 |||||||| ||| | | ||| |||| ||||| ||||| || || ||| || | ||| Sbjct 1090 ACCAAAAATAATCCTTGTCTTA-TTGGGGAACCTGGTGTCGGGAAGACAGCTATTGCTGA 1148 Query 150439 CGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTAT-----GAAAGATGTT 150493 || | || ||| | || || || || ||||| || || | || |||||| | | Sbjct 1149 AGGTCTTGCTCAAAGGATTGCAAACGGCGATGTCCCCGAAACCATTGAGGGAAAGAAGGT 1208 Query 150494 GAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGGTGAATTC 150553 | | | | |||||||| | || |||||| ||||| || ||||| ||||| Sbjct 1209 TATAACCCTAG-----ATATGGGTCTACTTGTTGCTGGAACTAAATACCGTGGAGAATTT 1263 Query 150554 GAAGAACGTGTAGACAATTTGCTACAAGAACTAAAAGAACGCGATGATGTTATTCTGTTC 150613 || || | | | || || | | ||| | ||| || | ||||| | || || ||| Sbjct 1264 GAGGAGAGGTTGAAAAAACTGATGGAGGAAATCAAACAAAGTGATGACATAATACTTTTC 1323 Query 150614 ATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCGGCGGTTCTTTGGATATG 150673 || |||||| | || ||| | || || || || || ||| || | | | ||| Sbjct 1324 ATTGATGAAGTGCACACTCTAATTGGAGCAGGAGCAGCTGAAGGGG---CAATTGATGCT 1380 Query 150674 AGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTC-GTGTCATCGGTGCAACAAC 150732 || || || ||||| ||||| || | |||||| | | |||| || || || || || Sbjct 1381 GCAAACATATTGAAACCAGCTCTTGCTAGAGGTGAACTACAGTGT-ATAGGAGCCACCAC 1439 Query 150733 CTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACTACAGCGTCGTTTC 150787 | ||||||||| | || ||||||||||||||| | || || || | || ||| Sbjct 1440 ATTAGATGAATATAGGAAGCACATTGAAAAAGATCCCGCTTTAGAGAGGCGATTC 1494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1146492651244182