Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq17518 178 7e-40 seq17517 178 7e-40 >seq17518 Length=2997 Score = 178 bits (196), Expect = 7e-40 Identities = 278/396 (70%), Gaps = 4/396 (1%) Strand=Plus/Minus Query 25906 CCAATCAGCATTTTGCTC--AACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAA 25963 ||||||| |||| |||| |||| | |||||||| | ||| || | ||| | |||||| Sbjct 1313 CCAATCACCATT--GCTCCGAACTCTTTCCATAAAAAGATCAGGCACCCAAAGGGCATAA 1256 Query 25964 AATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCA 26023 |||||||||| || | | |||||| |||||||| || |||| | || ||||| ||| Sbjct 1255 AATAAATCTCGAGCACGCTGTTCTTCCTTTCCGTGGTTTATTTTCAACTCCAAGAATTCA 1196 Query 26024 AAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCA 26083 || | ||| | ||||||||||| || || | ||||||| ||||||||| || ||||| Sbjct 1195 AATACATCAGCATGCCATGGTTCCAAGTATACAGCAAAAGCACCTTTTCTCTTGCCTCCT 1136 Query 26084 CCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTT 26143 || ||||| || |||| ||||| |||||||| || || |||||||| | ||| | Sbjct 1135 CCCTGATCAACATATCGGGCAGTGTCATTGAACACACGCAGCATTGGAATGATACCATTA 1076 Query 26144 GAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATA 26203 || || ||||| | | |||| | | || | || || | ||| || || | Sbjct 1075 GACGTCCCATTTGTTCCACGAATGTAGCTGCCATATGCCCTTATGTTATGAACAGAAACA 1016 Query 26204 CCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCT 26263 || || || ||||| |||| ||| | || || ||| | |||||| |||| ||| Sbjct 1015 CCAATCCCTCCAGCAGATTTACTAATGACAGCGCACTCTTTCAATGTATCATAAATCCCT 956 Query 26264 TTTATGCTATCACCTTTCATTCCTAATAAAAAACAA 26299 | || |||||| ||||||| | || || || ||| Sbjct 955 TCAATACTATCATCTTTCATACATATCAAGAAGCAA 920 >seq17517 Length=2996 Score = 178 bits (196), Expect = 7e-40 Identities = 278/396 (70%), Gaps = 4/396 (1%) Strand=Plus/Minus Query 25906 CCAATCAGCATTTTGCTC--AACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAA 25963 ||||||| |||| |||| |||| | |||||||| | ||| || | ||| | |||||| Sbjct 1312 CCAATCACCATT--GCTCCGAACTCTTTCCATAAAAAGATCAGGCACCCAAAGGGCATAA 1255 Query 25964 AATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCA 26023 |||||||||| || | | |||||| |||||||| || |||| | || ||||| ||| Sbjct 1254 AATAAATCTCGAGCACGCTGTTCTTCCTTTCCGTGGTTTATTTTCAACTCCAAGAATTCA 1195 Query 26024 AAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCA 26083 || | ||| | ||||||||||| || || | ||||||| ||||||||| || ||||| Sbjct 1194 AATACATCAGCATGCCATGGTTCCAAGTATACAGCAAAAGCACCTTTTCTCTTGCCTCCT 1135 Query 26084 CCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTT 26143 || ||||| || |||| ||||| |||||||| || || |||||||| | ||| | Sbjct 1134 CCCTGATCAACATATCGGGCAGTGTCATTGAACACACGCAGCATTGGAATGATACCATTA 1075 Query 26144 GAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATA 26203 || || ||||| | | |||| | | || | || || | ||| || || | Sbjct 1074 GACGTCCCATTTGTTCCACGAATGTAGCTGCCATATGCCCTTATGTTATGAACAGAAACA 1015 Query 26204 CCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCT 26263 || || || ||||| |||| ||| | || || ||| | |||||| |||| ||| Sbjct 1014 CCAATCCCTCCAGCAGATTTACTAATGACAGCGCACTCTTTCAATGTATCATAAATCCCT 955 Query 26264 TTTATGCTATCACCTTTCATTCCTAATAAAAAACAA 26299 | || |||||| ||||||| | || || || ||| Sbjct 954 TCAATACTATCATCTTTCATACATATCAAGAAGCAA 919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252809757243425