Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq46009 141 1e-28 seq34025 116 5e-21 seq2801 102 1e-16 seq56143 98.7 1e-15 seq48696 96.9 5e-15 seq2803 96.9 5e-15 seq2802 96.9 5e-15 seq56145 93.3 6e-14 seq56144 93.3 6e-14 seq33732 89.7 8e-13 seq2799 87.8 3e-12 >seq46009 Length=1074 Score = 141 bits (156), Expect = 1e-28 Identities = 364/550 (66%), Gaps = 13/550 (2%) Strand=Plus/Minus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || ||||||||| ||| | ||| || ||||| || |||| ||| || || || | Sbjct 593 CAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 534 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || ||||||| ||||| ||||| ||||| ||||| | ||| || | || || ||| Sbjct 533 CCTGGCATTAGTCCTCTCTTTTTAAGCCAGAATATGGCACAGAAGCTTCCTGAGAAAAAT 474 Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGT 18337 || || ||||| || || || | | | || || ||||| || | | | | || Sbjct 473 ATCCCTTCAACACATGCAAAACCAACAAGCCTCTCCGCAAA--TGAAGTG---GAACTGT 419 Query 18338 --ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCAT 18395 ||||| | ||||||||| | | | ||| || | | | || || |||| Sbjct 418 TAATCCAACTCAATGCCCATTCAGCCTTCCTTGCAACACAAGGAAGATTTTCAATTGCAT 359 Query 18396 TAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACA 18455 | ||||| | || || || |||||||| ||||| || || | | |||| ||||| Sbjct 358 TGAACAATTTATGCTTCTCGACTGAATCTTTAATATATGTCTCCAACAGCAAACTATACA 299 Query 18456 TTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCT-CGGGA 18514 | |||||||| || | || || ||||||||||| | || || | | ||||| ||||| Sbjct 298 TCTCAGAATGAATATTCTCGATTGCTATCTGAAACCCGTAGAATGCCCGAGCCTCCGGGA 239 Query 18515 TATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGAT 18574 | ||||| || | ||| ||| | |||||||||| ||| || || |||| | | Sbjct 238 T-TTGAACGTCATTCAGAAACCTTGCAGCCAAATTCTCCAAAACGATTCCATCAGATGTT 180 Query 18575 GCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTT--CC 18632 || ||||| || | || | | ||||| || || || || ||| | ||| || Sbjct 179 GCAAAAAAAGCAAGGACGTGTGATATGAAGTGCTTCTCGGAGTC--TGACAAGGTTGCCC 122 Query 18633 ATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692 | | || || ||| | || ||||| |||||||| | ||||| ||| | ||| |||| Sbjct 121 AATGATGTACATCATAGGAGAGATCTACTTCTTCGGCGGTCCAGAAACTGGCTTCAGCCT 62 Query 18693 GTTTGTACAT 18702 ||||||||| Sbjct 61 TTTTGTACAT 52 >seq34025 Length=456 Score = 116 bits (128), Expect = 5e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || ||||| ||||| || ||||| ||||| || ||| ||| Sbjct 133 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATTACCTTAGAGGTAGAAAGTTCA 192 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||| ||||||||||| || || || || || ||||| || Sbjct 193 GACACCATTGATAACGTGAAGGCAAAAATACAAGACAAGGAGGGAATCCCACCAGATCAG 252 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||| || || |||||||||||| ||||||||| | ||||| || Sbjct 253 CAGAGGTTGATCTTTGCTGGCAAACAGCTCGAAGATGGCAGAACTTTGGCCGATTACAAC 312 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || ||||| | || || ||| | ||||| Sbjct 313 ATCCAGAAAGAATCCACCCTCCATCTTGTGTT 344 >seq2801 Length=469 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||||||||| || |||||||| || | || || || |||| Sbjct 73 ATGCAAATCTTTGTGAAAACATTGACCGGCAAAACTATCACTCTTGAGGTGGAGAGTTCT 132 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||||||||| |||||| |||||||| ||||| || ||||| || || Sbjct 133 GATACCATAGACAACGTGAAATCTAAAATCCAAGATAAGGAAGGTATTCCTCCTGATCAG 192 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||||| | || | ||| || || || | |||||| Sbjct 193 CAAAGGCTTATCTTTGCTGGGAAACAATTGGAAGAT 228 >seq56143 Length=1408 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | ||||||||||| || ||| | || || ||| || Sbjct 978 ATGCAAATCTTCGTCAAAACGCTAACTGGAAAAACCATCACACTGGAGGTTGAATCCTCG 919 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||||| || || || || |||||||| || ||||| || ||| Sbjct 918 GACACAATCGACAACGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCGGATCAA 859 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||||| | ||| || ||||| || || || |||||| | | ||||||||| Sbjct 858 CAGCGATTGATCTTTGCGGGAAAGCAACTGGAGGACGGGAGAACTCTTGCGGATTATAAT 799 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || || ||||| || Sbjct 798 ATCCAGAAAGAGTCTACTCTCCATTTGGT 770 >seq48696 Length=1151 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || | || || ||||| || || | || || || |||| Sbjct 305 ATGCAGATCTTTGTTAAGACGCTCACCGGGAAAACCATCACCCTCGAGGTTGAGAGTTCT 364 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || |||||||| ||| || || ||||| ||||| || ||||| || || Sbjct 365 GATACCATCGACAACGTGAAGGCTAAGATCCAGGATAAGGAAGGAATCCCTCCGGATCAG 424 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||| ||||||||||| ||||| || ||| | | ||||| ||| Sbjct 425 CAGAGGTTGATCTTTGCGGGTAAGCAGCTGGAAGACGGAAGGACTCTTGCTGATTACAAT 484 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || || ||| |||| ||||| Sbjct 485 ATCCAGAAGGAGTCGACCCTTCA 507 >seq2803 Length=533 Score = 96.9 bits (106), Expect = 5e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | || ||||| || || || || || || ||| |||| Sbjct 421 ATGCAAATTTTTGTCAAGACCCTTACCGGAAAGACCATAACTTTGGAGGTAGAAAGTTCT 362 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| | |||||| || || ||||| || || |||||||| || Sbjct 361 GATACAATTGATAATGTGAAGACTAAAATTCAGGACAAAGAGGGAATTCCTCCAGACCAG 302 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | |||| ||| |||||||| | || ||| | ||| | | ||||||||| Sbjct 301 CAGAGGCTAATTTTTGCTGGTAAGCAATTGGAGGATGGTCGTACTCTGGCTGATTATAAT 242 Query 156003 ATA 156005 ||| Sbjct 241 ATA 239 >seq2802 Length=1024 Score = 96.9 bits (106), Expect = 5e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | || ||||| || || || || || || ||| |||| Sbjct 912 ATGCAAATTTTTGTCAAGACCCTTACCGGAAAGACCATAACTTTGGAGGTAGAAAGTTCT 853 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| | |||||| || || ||||| || || |||||||| || Sbjct 852 GATACAATTGATAATGTGAAGACTAAAATTCAGGACAAAGAGGGAATTCCTCCAGACCAG 793 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | |||| ||| |||||||| | || ||| | ||| | | ||||||||| Sbjct 792 CAGAGGCTAATTTTTGCTGGTAAGCAATTGGAGGATGGTCGTACTCTGGCTGATTATAAT 733 Query 156003 ATA 156005 ||| Sbjct 732 ATA 730 >seq56145 Length=1576 Score = 93.3 bits (102), Expect = 6e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | || |||||||| || ||| | || || ||| || Sbjct 978 ATGCAAATCTTCGTGAAAACCCTAACCGGAAAAACCATCACACTGGAGGTTGAATCCTCG 919 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||||| || || || || |||||||| || ||||| || ||| Sbjct 918 GACACAATCGACAACGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCGGATCAA 859 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||||| | ||| || ||||| || || || |||||| | | ||||||||| Sbjct 858 CAGCGATTGATCTTTGCGGGAAAGCAACTGGAGGACGGGAGAACTCTTGCGGATTATAAT 799 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || || ||||| || Sbjct 798 ATCCAGAAAGAGTCTACTCTCCATTTGGT 770 >seq56144 Length=1637 Score = 93.3 bits (102), Expect = 6e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | || |||||||| || ||| | || || ||| || Sbjct 978 ATGCAAATCTTCGTGAAAACCCTAACCGGAAAAACCATCACACTGGAGGTTGAATCCTCG 919 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||||| || || || || |||||||| || ||||| || ||| Sbjct 918 GACACAATCGACAACGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCGGATCAA 859 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||||| | ||| || ||||| || || || |||||| | | ||||||||| Sbjct 858 CAGCGATTGATCTTTGCGGGAAAGCAACTGGAGGACGGGAGAACTCTTGCGGATTATAAT 799 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || || ||||| || Sbjct 798 ATCCAGAAAGAGTCTACTCTCCATTTGGT 770 >seq33732 Length=802 Score = 89.7 bits (98), Expect = 8e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| | || ||||| || |||||| |||| || || ||| Sbjct 479 ATGCAAATCTTTGTCAAAACCCTTACAGGAAAGACCATTACACTAGAGGTGGAGAGTTCA 538 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || || || || || || ||||| ||||| || || || ||| Sbjct 539 GACACCATAGACAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCACCGGACCAA 598 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| || || |||||||||||| ||||||||| | ||||| || Sbjct 599 CAGAGGCTCATCTTTGCTGGCAAACAGCTCGAAGATGGCAGAACTTTGGCCGATTACAAC 658 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || ||||| | || || ||| | ||||| Sbjct 659 ATCCAGAAAGAATCCACCCTCCATCTTGTGTT 690 >seq2799 Length=391 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || |||| ||||| || || || | || || || |||| Sbjct 68 ATGCAGATATTTGTGAAGACTCTGACAGGAAAGACCATCACCCTTGAGGTTGAGAGTTCT 127 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || ||||| || |||||||| ||||| || || || || || || Sbjct 128 GACACAATTGACAATGTGAAGGCCAAGATACAAGACAAAGAGGGTATCCCACCGGATCAG 187 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| || || |||||||||||| | ||||| | | ||||||||| Sbjct 188 CAGAGGCTTATCTTTGCTGGAAAACAGCTCGAAGATGGCCGAACTCTGGCCGATTATAAT 247 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || || | || |||||| | || || | || || || ||| Sbjct 248 ATTCAGAAGGAATCCACCCTTCATCTTGTCCTACGTTTGAGGGGAGGT 295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731188989604400