Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq56145 118 2e-21 seq56144 118 2e-21 seq56143 118 2e-21 seq2802 116 7e-21 seq34025 113 8e-20 seq2803 113 8e-20 seq2804 109 1e-18 seq25475 102 1e-16 seq2801 100 5e-16 seq33732 95.1 2e-14 seq46009 84.2 4e-11 >seq56145 Length=1576 Score = 118 bits (130), Expect = 2e-21 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||||||||| | | || ||| | || || | ||||||||||||||| || | | Sbjct 568 AATATTATAATCAGCAAGAGTGCGTCCATCTTCAAGTTGTTTACCAGCAAAGATAAGACG 627 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 |||||| ||||||||||| ||||| ||||| || || || ||| |||||| ||||| Sbjct 628 CTGTTGATCAGGTGGTATCCCTTCCTTATCCTGAATCTTGGCTTTCACATTATCAATAGT 687 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || || || || | |||||| || ||||| ||||| || || | || ||||| Sbjct 688 ATCCGAACTCTCCACCTCCAAAGTAATTGTCTTACCCGTTAAAGTCTTGACAAAAATCTG 747 Query 172067 CAT 172069 ||| Sbjct 748 CAT 750 Score = 111 bits (122), Expect = 3e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 || ||||| | ||||| |||||| ||||||||||| | | || || |||| ||| Sbjct 770 ACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATCCGCAAGAGTTCTCCCGTCCTCC 829 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 | ||| || || ||||| || |||| |||||| || || || ||||||||||| || || Sbjct 830 AGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGGAATTCCTTCTTTGTCCTGG 889 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 || || || || || || || || || ||||| || || || || |||||||| Sbjct 890 ATCTTCGCCTTCACGTTGTCGATTGTGTCCGAGGATTCAACCTCCAGTGTGATGGTTTTT 949 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| ||||| | ||| || ||||| Sbjct 950 CCGGTTAGGGTTTTCACGAAGATTTGCAT 978 >seq56144 Length=1637 Score = 118 bits (130), Expect = 2e-21 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||||||||| | | || ||| | || || | ||||||||||||||| || | | Sbjct 568 AATATTATAATCAGCAAGAGTGCGTCCATCTTCAAGTTGTTTACCAGCAAAGATAAGACG 627 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 |||||| ||||||||||| ||||| ||||| || || || ||| |||||| ||||| Sbjct 628 CTGTTGATCAGGTGGTATCCCTTCCTTATCCTGAATCTTGGCTTTCACATTATCAATAGT 687 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || || || || | |||||| || ||||| ||||| || || | || ||||| Sbjct 688 ATCCGAACTCTCCACCTCCAAAGTAATTGTCTTACCCGTTAAAGTCTTGACAAAAATCTG 747 Query 172067 CAT 172069 ||| Sbjct 748 CAT 750 Score = 111 bits (122), Expect = 3e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 || ||||| | ||||| |||||| ||||||||||| | | || || |||| ||| Sbjct 770 ACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATCCGCAAGAGTTCTCCCGTCCTCC 829 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 | ||| || || ||||| || |||| |||||| || || || ||||||||||| || || Sbjct 830 AGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGGAATTCCTTCTTTGTCCTGG 889 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 || || || || || || || || || ||||| || || || || |||||||| Sbjct 890 ATCTTCGCCTTCACGTTGTCGATTGTGTCCGAGGATTCAACCTCCAGTGTGATGGTTTTT 949 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| ||||| | ||| || ||||| Sbjct 950 CCGGTTAGGGTTTTCACGAAGATTTGCAT 978 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| ||||| ||||| || ||||| || || | ||| || || || || ||||| || | Sbjct 1050 CGTCTTCCAACTGTTTTCCGGCAAAGATCAACCGCTGCTGATCGGGAGGAATTCCCTCCT 1109 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | ||||| || ||| ||| || || || || || || ||||| || ||||| || | Sbjct 1110 TGTCTTGAATCTTAGCTTTCACGTTGTCGATGGTGTCGGAGGATTCAACCTCTAGGGTTA 1169 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||||||| |||| ||||| | || || ||||| Sbjct 1170 TGGTTTTACCGGTTAGGGTTTTCACAAAGATTTGCAT 1206 >seq56143 Length=1408 Score = 118 bits (130), Expect = 2e-21 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||||||||| | | || ||| | || || | ||||||||||||||| || | | Sbjct 568 AATATTATAATCAGCAAGAGTGCGTCCATCTTCAAGTTGTTTACCAGCAAAGATAAGACG 627 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 |||||| ||||||||||| ||||| ||||| || || || ||| |||||| ||||| Sbjct 628 CTGTTGATCAGGTGGTATCCCTTCCTTATCCTGAATCTTGGCTTTCACATTATCAATAGT 687 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || || || || | |||||| || ||||| ||||| || || | || ||||| Sbjct 688 ATCCGAACTCTCCACCTCCAAAGTAATTGTCTTACCCGTTAAAGTCTTGACAAAAATCTG 747 Query 172067 CAT 172069 ||| Sbjct 748 CAT 750 Score = 116 bits (128), Expect = 7e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 || ||||| | ||||| |||||| ||||||||||| | | || || |||| ||| Sbjct 770 ACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATCCGCAAGAGTTCTCCCGTCCTCC 829 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 | ||| || || ||||| || |||| |||||| || || || ||||||||||| || || Sbjct 830 AGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGGAATTCCTTCTTTGTCCTGG 889 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 || || || || || || || || || ||||| || || || || |||||||| Sbjct 890 ATCTTCGCCTTCACGTTGTCGATTGTGTCCGAGGATTCAACCTCCAGTGTGATGGTTTTT 949 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| ||||| | ||| || ||||| Sbjct 950 CCAGTTAGCGTTTTGACGAAGATTTGCAT 978 >seq2802 Length=1024 Score = 116 bits (128), Expect = 7e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | ||| || | || | ||| | ||||| || || ||||||||||| | Sbjct 686 CCACCGCGAAGACGAAGAACAAGATGCAGAGTAGATTCCTTCTGTATATTATAATCAGCC 745 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | || || | || |||||||| |||||||||||||||| ||||| ||||| || || Sbjct 746 AGAGTACGACCATCCTCCAATTGCTTACCAGCAAAAATTAGCCTCTGCTGGTCTGGAGGA 805 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 ||||| ||||| || || |||||| | || |||||| || ||||| || |||||| Sbjct 806 ATTCCCTCTTTGTCCTGAATTTTAGTCTTCACATTATCAATTGTATCAGAACTTTCTACC 865 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || | ||| ||||| || || || | || || | || || ||||| Sbjct 866 TCCAAAGTTATGGTCTTTCCGGTAAGGGTCTTGACAAAAATTTGCAT 912 >seq34025 Length=456 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | |||||| || || | ||| | || | ||||| || || ||||| Sbjct 362 ATACCACCACGAAGTCGCAACACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAATCG 303 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| || | || || | ||||| |||||||| || || ||||| || || ||| Sbjct 302 GCCAAAGTTCTGCCATCTTCGAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGT 243 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || || ||||||||||| || || ||| || || ||||| |||| Sbjct 242 GGGATTCCCTCCTTGTCTTGTATTTTTGCCTTCACGTTATCAATGGTGTCTGAACTTTCT 183 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| |||||||| || || || || || || | ||| |||||||| Sbjct 182 ACCTCTAAGGTAATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 133 >seq2803 Length=533 Score = 113 bits (124), Expect = 8e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||||||||| | | || || | || |||||||| |||||||||||||||| ||| Sbjct 240 ATATTATAATCAGCCAGAGTACGACCATCCTCCAATTGCTTACCAGCAAAAATTAGCCTC 299 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||| || || ||||| ||||| || || |||||| | || |||||| || ||| Sbjct 300 TGCTGGTCTGGAGGAATTCCCTCTTTGTCCTGAATTTTAGTCTTCACATTATCAATTGTA 359 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || |||||| || | ||| ||||| || || || | || || | || || ||| Sbjct 360 TCAGAACTTTCTACCTCCAAAGTTATGGTCTTTCCGGTAAGGGTCTTGACAAAAATTTGC 419 Query 172068 AT 172069 || Sbjct 420 AT 421 >seq2804 Length=712 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || || || | ||| | ||| | |||||| ||| || ||||||| Sbjct 712 ACCACCACGAAGACGCAACACAAGATGGAGAGTTGACTCTTTCTGAATGTTGTAATCTGC 653 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||||| || | || || | ||||| |||||||| || | ||||||||||| ||||| Sbjct 652 TAAAGTTCTGCCATCCTCAAGCTGTTTGCCAGCAAAGATAAGCCTCTGTTGGTCGGGTGG 593 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || || |||||||| || || || ||| ||||| || ||||| || || || Sbjct 592 AATGCCCTCTTTATCCTGAATCTTGGCTTTGACATTGTCAATGGTATCAGAGCTCTCGAC 533 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||| || ||||| | ||||| | || || ||||| Sbjct 532 CTCAAGGGTGATGGTCTTTCCAGTGAGAGTTTTCACAAAGATTTGCAT 485 Score = 96.9 bits (106), Expect = 6e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | |||||| || |||||||| | | ||| ||||||||||| || ||||| || Sbjct 411 TCCTCTAGTTGTTTGCCGGCAAAAATGAGACGCTGCTGGTCAGGTGGGATCCCTTCCTTG 352 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || || || ||||| ||| |||||||| || ||||| ||||| ||| Sbjct 351 TCTTGAATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGTGATG 292 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || ||||| | || |||| ||| || ||||| || Sbjct 291 GTCTTGCCAGTGAGGGTCTTAACGAAAATTTGCATCTT 254 >seq25475 Length=2349 Score = 102 bits (112), Expect = 1e-16 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 39117 TATAGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTA 39176 || || ||||| || ||||| ||| | ||||||||| | || |||| || || | Sbjct 1524 TAAAGCAAACAAGCGAAATCGCAATGAAGACCTTCGTCGCGTGAAATAAGCTCGTTTGAA 1583 Query 39177 AAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTA 39236 |||||||||||||||||||| || | ||||| ||||| || || | ||||||| Sbjct 1584 AAAGTTAATCCTGGCATTAAACCGCGTTTTTTGAGCCAGAAAATCGCACAGAAACTACCT 1643 Query 39237 GAAAAGAATATACCCTCCACACACGCAAATGCTA 39270 ||||| |||||||| || || || |||||||||| Sbjct 1644 GAAAAAAATATACCTTCAACGCAAGCAAATGCTA 1677 >seq2801 Length=469 Score = 100 bits (110), Expect = 5e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || ||||||||||| |||||||| || | || || || ||||| || || ||||| ||| Sbjct 227 TCTTCCAATTGTTTCCCAGCAAAGATAAGCCTTTGCTGATCAGGAGGAATACCTTCCTTA 168 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| |||||| ||| || || ||| ||||| || || || || ||||| || Sbjct 167 TCTTGGATTTTAGATTTCACGTTGTCTATGGTATCAGAACTCTCCACCTCAAGAGTGATA 108 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| || || |||||||| | || || ||||| || Sbjct 107 GTTTTGCCGGTCAATGTTTTCACAAAGATTTGCATCTT 70 >seq33732 Length=802 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | |||||| || || | ||| | || | ||||| || || ||||| Sbjct 708 ATACCACCACGAAGTCGCAACACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAATCG 649 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| || | || || | ||||| |||||||| || | ||||||||||| ||| Sbjct 648 GCCAAAGTTCTGCCATCTTCGAGCTGTTTGCCAGCAAAGATGAGCCTCTGTTGGTCCGGT 589 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| || || || || || ||||| ||| || ||||| || Sbjct 588 GGAATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTGTCTATGGTGTCTGAACTCTCC 529 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| |||||||| || || || | ||||| | || || ||||| Sbjct 528 ACCTCTAGTGTAATGGTCTTTCCTGTAAGGGTTTTGACAAAGATTTGCAT 479 >seq46009 Length=1074 Score = 84.2 bits (92), Expect = 4e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 39117 TATAGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTA 39176 ||||| | || |||||||| || | ||| ||||| ||||| || | |||||| Sbjct 602 TATAGCATGCAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTGAG 543 Query 39177 AAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTA 39236 || || | |||||||||| |||||||||||||||||| ||||| | || || | Sbjct 542 AATGTCAGACCTGGCATTAGTCCTCTCTTTTTAAGCCAGAATATGGCACAGAAGCTTCCT 483 Query 39237 GAAAAGAATATACCCTCCACACACGCAAA 39265 || || ||||| || || ||||| ||||| Sbjct 482 GAGAAAAATATCCCTTCAACACATGCAAA 454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904291293142200