Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq25475 134 2e-25 seq54816 111 2e-18 >seq25475 Length=2349 Score = 134 bits (148), Expect = 2e-25 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | | ||||| || |||||||| | ||||| || ||||| ||||| ||| Sbjct 1878 GCCTCTGAGATTTGGATTTCTTTCATGAATCTTCCGGCGAGATTCTCCAAGACGATTCCG 1937 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| |||||| || ||||| ||||| ||| | |||||| ||||| ||||| |||| Sbjct 1938 TCGGAGGCGGCAAAGAAGGCAAGGACATGCGAAACAAAGTGGCGCTCACCGTCGGTGAGG 1997 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 |||| |||||| | || | ||| ||||| || ||||||||||| || ||||| Sbjct 1998 GAGATCCAGTGCTGGTTATCTTGGGAGAGATCGACTTCTTCGGCGGTCCAGAAAGAGGCT 2057 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 ||||| || |||||||| ||||| || |||| |||| ||||||| Sbjct 2058 TCGGCTTTCTTGTACATTTCCCAGATTTTAGGGTATTGGATTGGGAACA 2106 Score = 123 bits (136), Expect = 4e-22 Identities = 199/285 (70%), Gaps = 6/285 (2%) Strand=Plus/Plus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 || ||||| | ||||| || |||||||| || || ||||||||||| || || ||||| Sbjct 1593 CCTGGCATTAAACCGCGTTTTTTGAGCCAGAAAATCGCACAGAAACTACCTGAAAAAAAT 1652 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 || || || ||| ||||| | || | || ||| || || || || || | Sbjct 1653 ATACCTTCAACGCAAGCAAATGCTACAATCCTCTCAGCGAATGTATC-AGACGAA----- 1706 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 | |||||| ||||||||||| || ||||||||| | | || | ||| || || ||| Sbjct 1707 TCGATCCATTTCATCGCCCATTCCGCCTTTTTCGCAATACATGGAATCGTCTCAATCGCG 1766 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAG 794619 |||| | | | |||||| | | || |||| || | |||| ||| || || || Sbjct 1767 TGAAACAAACGATTCTTCTCTGCTGAATCTTTGATATACGCCTCGAGGAGAAGAGAATAC 1826 Query 794620 GTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 ||||||| ||||| || ||||| ||||||||||| || || ||| Sbjct 1827 ATCTCTGAATGGATATTCTCGATTGCGATCTGGAATCCGTAGAAG 1871 >seq54816 Length=1326 Score = 111 bits (122), Expect = 2e-18 Identities = 313/473 (66%), Gaps = 6/473 (1%) Strand=Plus/Minus Query 2018916 CCGTGGATCGAAAAGTACCGCCCGACAGTGCTCGACGACATCGTGGGCAACGAGCACGCC 2018975 |||||| |||| ||||||||||| | | ||| ||||||||| |||||||| ||||| Sbjct 1205 CCGTGGGTCGAGAAGTACCGCCCCAGCAAGGTCGTCGACATCGTCGGCAACGAAGACGCC 1146 Query 2018976 GTTGCCTACCTCAAGGCGCTGGCCGCCGACGGCAACATGCCCAACCTCTTGCTGGCGGGC 2019035 ||| || ||| | | | || ||||||||||||||||||||| | | | || Sbjct 1145 GTTTCCAGACTCCAAGTCATCGCTCGTGACGGCAACATGCCCAACCTCATTTTATCAGGT 1086 Query 2019036 CCGCCCGGCACGGGCAAGACCACGAGCATCGCGTG-CCTGGCGCGCGTGC-TCTTGGGCG 2019093 || || || || || || ||||| || || | || ||| |||| || || ||| || | Sbjct 1085 CCTCCTGGAACTGGAAAAACCACCAGTAT-ACTTGCCCTTGCGCACGAGCTTCTCGGTCC 1027 Query 2019094 CGGCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCG 2019153 | || || || || || ||||| ||||| ||||| || | || | || |||| Sbjct 1026 CAATTATAGA-GAAGCTGTTCTTGAACTAAATGCATCAGATGATAGAGGAATAGATGTCG 968 Query 2019154 TGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAATCGAC-CTGCCGCCCGGCCGCCAC 2019212 || | | | |||||| || || ||| || || || || || ||||| ||| Sbjct 967 TGAGGAACAAGATCAAG-ATGTTTGCTCAAAAGAAAGTAACACTTCCTCCGGGCCGACAC 909 Query 2019213 AAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGA 2019272 || || | || |||||||| || ||| || | || || | || || || || | || Sbjct 908 AAAGTTGTTATACTCGATGAAGCTGACAGCATGACATCTGGAGCACAACAAGCTTTAAGA 849 Query 2019273 TCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTCG 2019332 ||| ||||| | || | || | || || || ||||| || ||||| || ||| | Sbjct 848 AGGACAATGGAGATATATTCTAATTCTACTCGTTTCGCGCTTGCTTGCAATACATCGGCT 789 Query 2019333 ATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCT 2019385 | | | || || | | ||||| | || || || || | ||| |||| || Sbjct 788 AAGATTATTGAGCCGATTCAGAGTAGGTGTGCAATTGTGAGATTTTCGCGACT 736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7908304581650301