Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq53415 111 1e-19 seq48696 104 2e-17 seq56144 100 2e-16 seq60039 87.8 1e-12 seq34025 87.8 1e-12 seq62831 86.0 4e-12 >seq53415 Length=940 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| | || |||| | || |||| ||||| |||||||| Sbjct 346 CTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCTTCCAACTGCTTCCCGGCGAA 287 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || || ||||| ||| | || | |||||||||||| | || || |||||| Sbjct 286 GATGAGACGCTGCTGATCTGGAGGAATCCCCTCCTTGTCTTGGATCTTGGTCTTGACGTT 227 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | || | ||| || || | |||||| ||||| ||||| ||||| || || Sbjct 226 GTCGATGGTGTCGGAAGACTCAACCTCGAGGGTTATCGTCTTCCCCGTTAGGGTTTTCAC 167 Query 34966 AAAGATCTGCATGATAGTGGA 34986 ||||||||||| | ||||| Sbjct 166 GAAGATCTGCATCTTGGTGGA 146 >seq48696 Length=1151 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| ||| |||||||| ||||| ||||| | || | || | || Sbjct 288 AGGACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGCAAGAGTACGACCGTCC 229 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || ||||||||||||||||| ||||||||||| | || | || |||||||| Sbjct 228 TCAAGCTGTTTTCCGGCGAAGATCAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCC 169 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | ||| |||||| || | || |||||| Sbjct 168 TGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAACTCTCGACCTCGAGAGTGATGGTC 109 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| |||||||| || || || || ||||| Sbjct 108 TTTCCGGTGAGGGTTTTAACGAATATTTGCAT 77 >seq56144 Length=1637 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | || |||||||| ||||| ||||| | |||| | || | || Sbjct 995 AGTACCAGGTGGAGCGTTGATTCCTTCTGTATGTTGTAGTCGGCTAGGGTTCGGCCGTCT 1054 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| || |||||||| ||||||| || ||||| || | || | ||||||||||| Sbjct 1055 TCCAACTGTTTTCCGGCAAAGATCAACCGCTGCTGATCGGGAGGAATTCCCTCCTTGTCT 1114 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||| ||| | || | || || || || || | ||||||||| Sbjct 1115 TGAATCTTAGCTTTCACGTTGTCGATGGTGTCGGAGGATTCAACCTCTAGGGTTATGGTT 1174 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 || || || ||||| || |||||||| |||||||| Sbjct 1175 TTACCGGTTAGGGTTTTCACAAAGATTTGCATGAT 1209 >seq60039 Length=228 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||||||| | ||||| || |||| |||| |||||||| || ||||| || | Sbjct 161 CCTCCCCTCAAACGAAGGACGAGATGAAGGGTGGATTCCTTCTGGATATTATAATCAGCC 102 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | | | || |||| || ||||| ||||| || || |||| | |||||||||| | || Sbjct 101 AAGGTTCGTCCATCTTCGAGTTGTTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGGGGA 42 Query 34871 ACCCCCTCCTTGTCGTTTATTTT 34893 | |||||||| || | ||| || Sbjct 41 ATACCCTCCTTATCCTGTATCTT 19 >seq34025 Length=456 Score = 87.8 bits (96), Expect = 1e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||||| | || || ||||||| |||| |||||||||||||||||| || | Sbjct 131 CCTCCCCTCAGACGAAGAACAAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCGGCC 72 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | | || |||| || || |||||||| || || |||| || ||||||||| | || Sbjct 71 AAAGTTCGGCCATCTTCAAGCTGCTTTCCCGCAAAAATCAATCTCTGCTGGTCTGGGGGA 12 Query 34871 ACCCCCTCCTT 34881 | |||||||| Sbjct 11 ATACCCTCCTT 1 >seq62831 Length=874 Score = 86.0 bits (94), Expect = 4e-12 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 34743 AATCAT--TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTT 34800 |||||| ||||||| || | ||||||||||| ||||| || || || |||||||| Sbjct 145 AATCATGGTTCCTCCTCTGAGCCTCAGGACCAAGTGAAGCGTTGATTCTTTTTGAATGTT 86 Query 34801 ATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTG 34860 ||| || | || |||| |||| ||||| ||||| ||||| || |||| | ||||| Sbjct 85 ATAATCAGCAAGAGTGCGACCATCTTCCAGCTGCTTACCGGCAAAAATCAACCTCTGCTG 26 Query 34861 GTCTTGCGGCACCCCCTCCTTGTC 34884 ||| | || | || |||||||| Sbjct 25 GTCAGGAGGGATACCTTCCTTGTC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325396449983921