Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq15741 93.3 8e-14 seq15740 93.3 8e-14 seq15739 93.3 8e-14 seq15738 93.3 8e-14 seq56145 86.0 1e-11 seq56144 86.0 1e-11 seq56143 86.0 1e-11 >seq15741 Length=1262 Score = 93.3 bits (102), Expect = 8e-14 Identities = 172/250 (69%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 142962 TATACAGATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCCGTCTTGCATATA 143021 ||||| || || ||||| ||| ||| |||||| ||| || |||| ||| | || || Sbjct 718 TATACCGACAATGATGAATGGTCTAGTTGGAAGAAACTAGGCGATAGCGTGCTTCACATT 659 Query 143022 GAACTTAGGAGATGGGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAATACGTTAGCA 143081 || ||| | | |||||| ||| | | | || || || ||| ||||||| || | | Sbjct 658 GAGCTTCGCAAATGGGCTGATATCATGGTCATTGCTCCATTATCGGCAAACACTCTTGGC 599 Query 143082 AAAATAGCCAACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATA 143141 || || || || | || || ||| |||| |||| ||| || ||||||||||| || Sbjct 598 AAGATTGCTGGAGGGTTGTGTGACAATCTACTGACATGTATTGTGAGAGCCTGGGA-CTA 540 Query 143142 AATAAACCTCTTATTTTTTG-TCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTAC 143200 | || | |||||| ||| || || ||||| | |||||||| | ||||| | || Sbjct 539 CAGCAAGCCATTATTTGTTGCACCTGCCATGAACACTTTTATGTGGAACAATCCTTTCAC 480 Query 143201 AGAAAAACAT 143210 ||| || ||| Sbjct 479 AGAGAAGCAT 470 >seq15740 Length=1172 Score = 93.3 bits (102), Expect = 8e-14 Identities = 172/250 (69%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 142962 TATACAGATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCCGTCTTGCATATA 143021 ||||| || || ||||| ||| ||| |||||| ||| || |||| ||| | || || Sbjct 718 TATACCGACAATGATGAATGGTCTAGTTGGAAGAAACTAGGCGATAGCGTGCTTCACATT 659 Query 143022 GAACTTAGGAGATGGGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAATACGTTAGCA 143081 || ||| | | |||||| ||| | | | || || || ||| ||||||| || | | Sbjct 658 GAGCTTCGCAAATGGGCTGATATCATGGTCATTGCTCCATTATCGGCAAACACTCTTGGC 599 Query 143082 AAAATAGCCAACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATA 143141 || || || || | || || ||| |||| |||| ||| || ||||||||||| || Sbjct 598 AAGATTGCTGGAGGGTTGTGTGACAATCTACTGACATGTATTGTGAGAGCCTGGGA-CTA 540 Query 143142 AATAAACCTCTTATTTTTTG-TCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTAC 143200 | || | |||||| ||| || || ||||| | |||||||| | ||||| | || Sbjct 539 CAGCAAGCCATTATTTGTTGCACCTGCCATGAACACTTTTATGTGGAACAATCCTTTCAC 480 Query 143201 AGAAAAACAT 143210 ||| || ||| Sbjct 479 AGAGAAGCAT 470 >seq15739 Length=1227 Score = 93.3 bits (102), Expect = 8e-14 Identities = 172/250 (69%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 142962 TATACAGATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCCGTCTTGCATATA 143021 ||||| || || ||||| ||| ||| |||||| ||| || |||| ||| | || || Sbjct 718 TATACCGACAATGATGAATGGTCTAGTTGGAAGAAACTAGGCGATAGCGTGCTTCACATT 659 Query 143022 GAACTTAGGAGATGGGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAATACGTTAGCA 143081 || ||| | | |||||| ||| | | | || || || ||| ||||||| || | | Sbjct 658 GAGCTTCGCAAATGGGCTGATATCATGGTCATTGCTCCATTATCGGCAAACACTCTTGGC 599 Query 143082 AAAATAGCCAACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATA 143141 || || || || | || || ||| |||| |||| ||| || ||||||||||| || Sbjct 598 AAGATTGCTGGAGGGTTGTGTGACAATCTACTGACATGTATTGTGAGAGCCTGGGA-CTA 540 Query 143142 AATAAACCTCTTATTTTTTG-TCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTAC 143200 | || | |||||| ||| || || ||||| | |||||||| | ||||| | || Sbjct 539 CAGCAAGCCATTATTTGTTGCACCTGCCATGAACACTTTTATGTGGAACAATCCTTTCAC 480 Query 143201 AGAAAAACAT 143210 ||| || ||| Sbjct 479 AGAGAAGCAT 470 >seq15738 Length=1310 Score = 93.3 bits (102), Expect = 8e-14 Identities = 172/250 (69%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 142962 TATACAGATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCCGTCTTGCATATA 143021 ||||| || || ||||| ||| ||| |||||| ||| || |||| ||| | || || Sbjct 718 TATACCGACAATGATGAATGGTCTAGTTGGAAGAAACTAGGCGATAGCGTGCTTCACATT 659 Query 143022 GAACTTAGGAGATGGGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAATACGTTAGCA 143081 || ||| | | |||||| ||| | | | || || || ||| ||||||| || | | Sbjct 658 GAGCTTCGCAAATGGGCTGATATCATGGTCATTGCTCCATTATCGGCAAACACTCTTGGC 599 Query 143082 AAAATAGCCAACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATA 143141 || || || || | || || ||| |||| |||| ||| || ||||||||||| || Sbjct 598 AAGATTGCTGGAGGGTTGTGTGACAATCTACTGACATGTATTGTGAGAGCCTGGGA-CTA 540 Query 143142 AATAAACCTCTTATTTTTTG-TCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTAC 143200 | || | |||||| ||| || || ||||| | |||||||| | ||||| | || Sbjct 539 CAGCAAGCCATTATTTGTTGCACCTGCCATGAACACTTTTATGTGGAACAATCCTTTCAC 480 Query 143201 AGAAAAACAT 143210 ||| || ||| Sbjct 479 AGAGAAGCAT 470 >seq56145 Length=1576 Score = 86.0 bits (94), Expect = 1e-11 Identities = 102/139 (73%), Gaps = 11/139 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGT-------TCTACA----GTCTT 81692 || ||| |||||||||| ||||||||||||| ||||| ||| || || | Sbjct 551 AGTGTAGATTCCTTCTGAATATTATAATCAGCAAGAGTGCGTCCATCTTCAAGTTGTTTA 610 Query 81693 CTAACAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 | | ||||||| || | |||||| | || |||| |||||||||| |||||||| ||| Sbjct 611 CCAGCAAAGATAAGACGCTGTTGATCAGGTGGTATCCCTTCCTTATCCTGAATCTTGGCT 670 Query 81753 TTTATATTTTCAATCGTAT 81771 || | ||| ||||| |||| Sbjct 671 TTCACATTATCAATAGTAT 689 >seq56144 Length=1637 Score = 86.0 bits (94), Expect = 1e-11 Identities = 102/139 (73%), Gaps = 11/139 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGT-------TCTACA----GTCTT 81692 || ||| |||||||||| ||||||||||||| ||||| ||| || || | Sbjct 551 AGTGTAGATTCCTTCTGAATATTATAATCAGCAAGAGTGCGTCCATCTTCAAGTTGTTTA 610 Query 81693 CTAACAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 | | ||||||| || | |||||| | || |||| |||||||||| |||||||| ||| Sbjct 611 CCAGCAAAGATAAGACGCTGTTGATCAGGTGGTATCCCTTCCTTATCCTGAATCTTGGCT 670 Query 81753 TTTATATTTTCAATCGTAT 81771 || | ||| ||||| |||| Sbjct 671 TTCACATTATCAATAGTAT 689 >seq56143 Length=1408 Score = 86.0 bits (94), Expect = 1e-11 Identities = 102/139 (73%), Gaps = 11/139 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGT-------TCTACA----GTCTT 81692 || ||| |||||||||| ||||||||||||| ||||| ||| || || | Sbjct 551 AGTGTAGATTCCTTCTGAATATTATAATCAGCAAGAGTGCGTCCATCTTCAAGTTGTTTA 610 Query 81693 CTAACAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 | | ||||||| || | |||||| | || |||| |||||||||| |||||||| ||| Sbjct 611 CCAGCAAAGATAAGACGCTGTTGATCAGGTGGTATCCCTTCCTTATCCTGAATCTTGGCT 670 Query 81753 TTTATATTTTCAATCGTAT 81771 || | ||| ||||| |||| Sbjct 671 TTCACATTATCAATAGTAT 689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902568102790240