Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq56145 87.8 2e-12 seq56144 87.8 2e-12 seq56143 87.8 2e-12 seq25475 87.8 2e-12 seq2805 82.4 7e-11 >seq56145 Length=1576 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| || |||||||| | | |||| |||||||||||||| || ||||| ||||| || Sbjct 595 ATCTTCAAGTTGTTTACCAGCAAAGATAAGACGCTGTTGATCAGGTGGTATCCCTTCCTT 654 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 ||| ||| || ||||| | || | |||||| | |||||| || | || | Sbjct 655 ATCCTGAATCTTGGCTTTCACATTATCAATAGTATCCGAACTCTCCACCTCCAAAGTAAT 714 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || ||||| || | ||| || | ||||||||||| Sbjct 715 TGTCTTACCCGTTAAAGTCTTGACAAAAATCTGCAT 750 >seq56144 Length=1637 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| || |||||||| | | |||| |||||||||||||| || ||||| ||||| || Sbjct 595 ATCTTCAAGTTGTTTACCAGCAAAGATAAGACGCTGTTGATCAGGTGGTATCCCTTCCTT 654 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 ||| ||| || ||||| | || | |||||| | |||||| || | || | Sbjct 655 ATCCTGAATCTTGGCTTTCACATTATCAATAGTATCCGAACTCTCCACCTCCAAAGTAAT 714 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || ||||| || | ||| || | ||||||||||| Sbjct 715 TGTCTTACCCGTTAAAGTCTTGACAAAAATCTGCAT 750 >seq56143 Length=1408 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| || |||||||| | | |||| |||||||||||||| || ||||| ||||| || Sbjct 595 ATCTTCAAGTTGTTTACCAGCAAAGATAAGACGCTGTTGATCAGGTGGTATCCCTTCCTT 654 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 ||| ||| || ||||| | || | |||||| | |||||| || | || | Sbjct 655 ATCCTGAATCTTGGCTTTCACATTATCAATAGTATCCGAACTCTCCACCTCCAAAGTAAT 714 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || ||||| || | ||| || | ||||||||||| Sbjct 715 TGTCTTACCCGTTAAAGTCTTGACAAAAATCTGCAT 750 >seq25475 Length=2349 Score = 87.8 bits (96), Expect = 2e-12 Identities = 337/521 (65%), Gaps = 24/521 (5%) Strand=Plus/Minus Query 46773 AAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCACGCTGGCCGAGCGC 46832 |||||||| | ||||| ||||| |||||||| | | | || | || ||| | Sbjct 1738 AAAAAGGCGGAATGGGCGATGAAATGGATCGATTC---GTCTGATACATTCGCTGAGAGG 1682 Query 46833 ATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTT 46892 || || ||||| || || ||||| | |||||||| || ||||| || ||||| Sbjct 1681 ATTGTAGCATTTGCTTGCGTTGAAGGTATATTTTTTTCAGGTAGTTTCTGTGCGATTTTC 1622 Query 46893 TACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGC 46952 | | |||| || ||||||| || | || || |||||| | || || ||| Sbjct 1621 TGGCTCAAAAAACGCGGTTTAATGCCAGGATTAACTTTTTCAAACGAGCTTATTTCACGC 1562 Query 46953 GACGAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAAA 47012 |||||||| || || || || || ||| | |||| | | | | | ||| Sbjct 1561 GACGAAGGTCTTCATTGCGATTTCGCTTGTTTGCTTTACT-------CATTATTAAAAAA 1509 Query 47013 TTAAACTCGGACACGATCCTGAGCAT--GTTTAGG---GAGGCGGT-GAGCATCGAAAAG 47066 |||||| | | || | | ||| | || | || ||||| ||| ||||| | | Sbjct 1508 G-AAACTCAGTGAAGAGCGCGTGCAGACGATTGTGCGTGACGCGGTTGAG-ATCGAGAGG 1451 Query 47067 GAGTTTTTTACTGCG--GCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAGTCTATGT 47124 |||||| | |||| ||||| || ||| ||| | || ||||||| | | ||| Sbjct 1450 GAGTTTGTG--TGCGACGCGCTTCCTTGCGCGTTGGTTGGGATGAACGGTGATTTGATGA 1393 Query 47125 GCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATT 47184 | |||||||||| ||| || ||| | |||||| | |||| || ||| || Sbjct 1392 GTACGTATATTGAGTATGTTGCTGATAGGTTGTTGGGGGAGCTTGGGTGTGGGAAGATTT 1333 Query 47185 TTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATT 47244 ||||| ||||||||||| | ||| | |||||||| |||| || ||||| | Sbjct 1332 ATAATGTGACGAATCCGTTTGATTGGATGGATCTGATTTCGCTTCAGGGGAAGACCAACT 1273 Query 47245 TTTTCGAGAAACGAGTCGGAGAGTATAAG--CGCTTCGGTG 47283 |||| ||||| || || ||||||||| || ||||||||| Sbjct 1272 TTTTTGAGAAGCGCGTTGGAGAGTATCAGAAGGCTTCGGTG 1232 >seq2805 Length=580 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| || | ||| | | | || ||||| || |||||||| ||| || || | | Sbjct 471 CGCAACACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAATCGGCCAAAGTTCTGCCA 412 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 |||||||||||||| || | | |||| || | ||||||||| || || || ||||| || Sbjct 411 TCTTCGAGCTGTTTGCCAGCAAAGATGAGCCTCTGTTGATCGGGCGGGATCCCTTCCTTG 352 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || || | | || | ||||| | ||| ||||||| || | Sbjct 351 TCTTGAATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGTGATG 292 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| || || || | |||||| ||||| Sbjct 291 GTCTTGCCAGTGAGGGTCTTAACGAAAATTTGCAT 257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476166408555240