Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq2805 96.9 3e-15 seq2801 96.9 3e-15 seq2799 93.3 4e-14 seq2804 89.7 5e-13 seq33732 84.2 2e-11 >seq2805 Length=580 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AG 25229 ||| |||||| | || || || || | || || || | ||||| ||||||| || || Sbjct 253 CAAGATGCAAATTTTCGTTAAGACCCTCACTGGCAAGACCATCACTCTCGAAGTTGAGAG 312 Query 25230 CCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCG 25289 | ||||| || || | || || || ||| || || || || || ||||||| Sbjct 313 TTCA-GATACCATAGACAATGTTAAGGCCAAGATTCAAGACAAGGAAGGGATCCCGCCCG 371 Query 25290 ATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATT 25349 |||| || || ||||| | | |||||||| |||||||||| |||| | | ||||| Sbjct 372 ATCAACAGAGGCTCATCTTTGCTGGCAAACAGCTCGAAGATGGCAGAACTTTGGCCGATT 431 Query 25350 ACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||| || || |||||||||||| | ||| | ||||| Sbjct 432 ACAACATCCAGAAAGAATCCACCCTCCATCTTGTGTT 468 >seq2801 Length=469 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| |||||| | ||||| |||||||| ||||| ||| | ||||| | || || || Sbjct 69 CAAGATGCAAATCTTTGTGAAAACATTGACCGGCAAAACTATCACTCTTGAGGTGGAGAG 128 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 ||||| || || | || ||| ||||| ||||| || ||||| || || || Sbjct 129 TTCTGATACCATAGACAACGTGAAATCTAAAATCCAAGATAAGGAAGGTATTCCTCCTGA 188 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 ||||||||| || || | | || |||||| | ||||||| | | | | ||||| Sbjct 189 TCAGCAAAGGCTTATCTTTGCTGGGAAACAATTGGAAGATGGTCGCACCCTTGCTGATTA 248 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||| || || || |||||||| |||| | || | |||||||||| |||| Sbjct 249 CAACATCCAGAAGGAATCCACTCTTCACCTTGTACTCCGATTGAGAGGTGGAA 301 >seq2799 Length=391 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 || ||||||||||| || || |||||||| || || || | | || ||||| |||||| Sbjct 161 GACAAAGAGGGTATCCCACCGGATCAGCAGAGGCTTATCTTTGCTGGAAAACAGCTCGAA 220 Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 |||| ||| | | |||||| |||||||| || ||||||||| ||||| | || || Sbjct 221 GATGGCCGAACTCTGGCCGATTATAATATTCAGAAGGAATCCACCCTTCATCTTGTCCTA 280 Query 25388 AGATTGAGAGGAGG 25401 | ||||| ||||| Sbjct 281 CGTTTGAGGGGAGG 294 >seq2804 Length=712 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| | || ||||| | ||||| | || ||||| | Sbjct 485 ATGCAAATCTTTGTGAAAACTCTCACTGGAAAGACCATCACCCTTGAGGTCGAGAGCTCT 544 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || ||| || ||| ||||||||||| || || ||||| || Sbjct 545 GATACCATTGACAATGTCAAAGCCAAGATTCAGGATAAAGAGGGCATTCCACCCGACCAA 604 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACAA 25353 || || || || | | |||||||| || || |||| |||| | | ||| |||||||| Sbjct 605 CAGAGGCTTATCTTTGCTGGCAAACAGCTTGAGGATGGCAGAACT-TTAGCAGATTACAA 663 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 ||||| ||||| || || | ||| | ||||| Sbjct 664 CATTCAGAAAGAGTCAACTCTCCATCTTGTGTT 696 >seq33732 Length=802 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 || |||||||| || || || || || || || ||||| | | |||||||| |||||| Sbjct 572 GACAAAGAGGGCATTCCACCGGACCAACAGAGGCTCATCTTTGCTGGCAAACAGCTCGAA 631 Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||| |||| | | ||||||||| || || |||||||||||| | ||| | ||||| Sbjct 632 GATGGCAGAACTTTGGCCGATTACAACATCCAGAAAGAATCCACCCTCCATCTTGTGTT 690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444679021214880