Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq25475 156 3e-33 seq54619 140 3e-28 seq46009 138 9e-28 seq22702 100 2e-16 >seq25475 Length=2349 Score = 156 bits (172), Expect = 3e-33 Identities = 395/589 (67%), Gaps = 10/589 (2%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| ||||| ||||| | | | || ||| |||||||||| ||||| | || || || | Sbjct 2106 TGTTCCCAATCCAATACCCTAAAATCTGGGAAATGTACAAGAAAGCCGAAGCCTCTTTCT 2047 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCA-CATTGGATTGCATTAAAACCA 43825 |||| || |||||||| ||| | | |||| | | || || ||||| | | | | | Sbjct 2046 GGACCGCCGAAGAAGTCGATCTCTCCCAAGA-TAACCAGCACTGGATCTCCCTCAC-CGA 1989 Query 43826 CAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGT 43884 | || || ||| | || || | || || ||||| || |||||| || || Sbjct 1988 CGGTGAGCGCCACTTTGTTTCGCATGTCCTTGCCTTCTTTGCCGCCTCCGACGGAATCGT 1929 Query 43885 CAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTT 43944 | || ||| | | | | || | ||||| | ||| | |||| || || || Sbjct 1928 CTTGGAGAATCTCGCCGGAAGATTCATGAAAGAAATCCAAATCTCAGAGGCGCGTGCCTT 1869 Query 43945 TTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGA 44004 || || || || || || || || ||||| ||||| || ||||| |||||| | || Sbjct 1868 CTACGGATTCCAGATCGCAATCGAGAATATCCATTCAGAGATGTATTCTCTTCTCCTCGA 1809 Query 44005 TACGTACATCAAAGATGG-GCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTAC 44063 |||| ||||||||| ||| |||||| |||| |||||| | ||||| || || | | Sbjct 1808 GGCGTATATCAAAGATTCAGCA-GAGAAGAATCGTTTGTTTCACGCGATTGAGACGATTC 1750 Query 44064 CTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTG 44123 | ||| | || || || ||||| | |||||||| |||| |||| | || | Sbjct 1749 CATGTATTGCGAAAAAGGCGGAATGGGCGATGAAATGGATCGATTCGTCTGATACATTCG 1690 Query 44124 GAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG- 44182 || | |||| || ||||| || ||||| || || |||||||| | |||| | Sbjct 1689 CTGAGAGGATTGTAGCATTTGCTTGCGTTGAAGGTATATTTTTTTCAGG-TAGTTTCTGT 1631 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 || || || ||| | || ||||| ||||| ||||| || || || |||||||| ||| | Sbjct 1630 GCGATTTTCTGGCTCAAAAAACGCGGTTTAATGCCAGGATTAACTTTTTCAAACGAGCTT 1571 Query 44243 ATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG--TTACT 44289 || || || ||||| | ||||||||||| ||||| ||| ||||| Sbjct 1570 ATTTCACGCGACGAAGGTCTTCATTGCGATTTCGCTTGTTTGCTTTACT 1522 >seq54619 Length=2611 Score = 140 bits (154), Expect = 3e-28 Identities = 438/668 (66%), Gaps = 18/668 (3%) Strand=Plus/Minus Query 19260 AGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGT--C 19317 ||||||| | || || ||||| ||||| |||| || |||||||| || | |||| | Sbjct 1790 AGAGTTTGCAGATATATTTCGAAGAGCTTTTGCATCTCGTGTTTTCCCTCCCCATGTGAC 1731 Query 19318 ATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGT 19377 || || | | ||||| || ||||| || | |||||||||| || || || | Sbjct 1730 ATCTAA-ATTAGGGATC-AAGCATGTAAAAGGCATGCTGCTTTATGGTCCTCCTGGAACT 1673 Query 19378 GGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAAACAACC-TCCCAAAAT 19436 ||||| || | || || | || || | ||| | | | | ||| ||| || || Sbjct 1672 GGAAAGACTCTTATGGCACGTCAAATTGGAAAAATTTTGA-ATGGCAAGGATCCGAAGAT 1614 Query 19437 TGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTA--CGA 19494 ||||||||| |||||| | || | |||| ||| ||| || | ||| | |||||| || Sbjct 1613 TGTAAATGGCCCTGAAGTTTTGAGCAAATTTGTGGGTGAAACTGAAAAGAATGTAAGGGA 1554 Query 19495 CGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCTTTGCAC 19554 | || |||||||| |||||| | || || | ||||| ||||| |||||| Sbjct 1553 CCTT--TTTGCTGATGCTGAACAGGATCAGAGGACCCTAGGGGATGAAAGTGATTTGCAT 1496 Query 19555 ATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC------TGGTGTA 19608 |||| ||| | |||||| | || || || |||||| ||||| || | || Sbjct 1495 GTTATTATATTTGATGAAATCGATGCTATTTGTAAGTCCAGAGGCTCAACTAAAGATGGT 1436 Query 19609 AATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAA 19668 | ||||| ||||| | |||| || || || || | || |||| ||||| | | Sbjct 1435 ACAGGAGTTCATGATAGCATTGTGAACCAGCTTCTTACTAAGATAGATGGTGTGGAATCA 1376 Query 19669 CTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTA 19728 || || ||| |||| ||||||| |||||||| ||| ||| | | || || | Sbjct 1375 CTAAACAATGTTTTGCTTATTGGAATGACTAACAGAAAGGACATGCTTGATGAAGCACTC 1316 Query 19729 TTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGT 19788 ||| ||||||| ||||||||| | | | || || | | || |||||| ||| || Sbjct 1315 TTAAGACCCGGGCGGTTGGAAGTCCAAGTTGAGATAAGTCTCCCGGATGAAAATGGTCGA 1256 Query 19789 GTGGAAATTTTAAACATACATA-CATCAACCATGCGACAAAATAACCTTTTAAATGACGA 19847 || ||||| | | || |||| || ||| ||| | | ||| || || | || Sbjct 1255 TTGCAAATTCTTCAAATTCATACCAACAA-GATGAAAGAGAATTCTTTTCTAGCTCCTGA 1197 Query 19848 TGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTGAGGG 19907 ||| |||| |||| |||| || || |||||||| || || || |||||||| || Sbjct 1196 TGTGAATCTTCAAGAGCTTGCTGCAAGAACTAAAAACTACAGTGGTGCGGAACTTGAAGG 1137 Query 19908 ATTAGTGA 19915 | |||| Sbjct 1136 TGTTGTGA 1129 >seq46009 Length=1074 Score = 138 bits (152), Expect = 9e-28 Identities = 384/586 (66%), Gaps = 10/586 (2%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||||||||||| ||| | | | ||| | ||||||||||| || | || || | Sbjct 20 TGTTTCCAATTCGATACAAACAACTCTGGGAGATGTACAAAAAGGCTGAAGCCAGTTTCT 79 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTA--AAACC 43824 |||| || |||||||| ||| | | | || || |||||| | || | || Sbjct 80 GGACCGCCGAAGAAGTAGATCTCTCCTATGATGTACATCATTGGGCAACCTTGTCAGACT 139 Query 43825 ACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGT 43884 | |||| || || ||||| || | || |||||||| | || || || || Sbjct 140 CCGAGAAGCAC--TTCATATCACACGTCCTTGCTTTTTTTGCAACATCTGATGGAATCGT 197 Query 43885 CAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTT 43944 || ||||||| | ||||| | | || |||||| | || || || || || Sbjct 198 TTTGGAGAATTTGGCTGCAAGGTTTCTGAATGACGTTCAAATCCCGGAGGCTCGGGCATT 257 Query 43945 TTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGA 44004 || |||||||| || || || || ||||||||||| || ||||| ||| | ||| | || Sbjct 258 CTACGGGTTTCAGATAGCAATCGAGAATATTCATTCTGAGATGTATAGTTTGCTGTTGGA 317 Query 44005 TACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC 44064 || || || |||||| |||||||||| |||||| ||||| || |||| | || Sbjct 318 GACATATATTAAAGATTCAGTCGAGAAGCATAAATTGTTCAATGCAATTGAAAATCTTCC 377 Query 44065 TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAA---TTCAAATGATTCTTT 44121 | || | || || || ||||| | | ||||| || ||| | ||| || Sbjct 378 TTGTGTTGCAAGGAAGGCTGAATGGGCATTGAGTTGGATTAACAGTTCCA---CTTCATT 434 Query 44122 TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGC 44181 || || | ||||| | |||||| ||| ||||| || || || |||||| || Sbjct 435 TGCGGAGAGGCTTGTTGGTTTTGCATGTGTTGAAGGGATATTTTTCTCAGGAAGCTTCTG 494 Query 44182 GGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTT 44241 |||||||| ||| | || || |||| | ||||| || |||| || |||||||| | Sbjct 495 TGCCATATTCTGGCTTAAAAAGAGAGGACTAATGCCAGGTCTGACATTCTCAAATGAACT 554 Query 44242 AATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTA 44287 ||| | | || || || | || || |||||||||||| || || Sbjct 555 AATCTCTAGAGACGAGGGTCTTCACTGTGATTTTGCTTGCATGCTA 600 >seq22702 Length=2386 Score = 100 bits (110), Expect = 2e-16 Identities = 353/549 (64%), Gaps = 2/549 (0%) Strand=Plus/Minus Query 40650 TCAATATTTGGATGTCAAAATAGATACAATTTGAGAAATCAGTTTCCGTTGCTAACTACa 40709 |||| |||||| || || | || | |||| || | | |||||| | ||||| || Sbjct 1237 TCAAAATTTGGTTGCCAGATGAGGTTCAATCTGCGCAGAGGCTTTCCGCTTCTAACAACT 1178 Query 40710 aaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGGTTTATCAAAGGTTGTACT 40769 || | | | |||||| || ||| ||||| || | |||||||||| || | || Sbjct 1177 AAGAGAGTATTTTGGCGCGGGGTTGTTGAAGAGCTTCTTTGGTTTATCAGTGGCTCAACA 1118 Query 40770 AATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAATGCGCACAGTTCTAAAACA 40829 ||||| | | ||| |||| ||| | || || ||| | | | |||| | Sbjct 1117 AATGCCATGGTGTTACAGGAAAAAGGCATTCATATATGGGACGATAATGCATCTAGGGAA 1058 Query 40830 TATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGA 40889 | | |||||| | || ||| ||||| || ||||| | || ||||||||||| Sbjct 1057 TTCCTTGATAGCATTGATTTGTCAGAGAGGGAGGAGGGTGACTTAGGACCTGTTTATGGG 998 Query 40890 TTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGTACTCTGATTATACCAATAAA 40949 ||||||| | | || ||||| || | ||| | ||| | ||| ||||| || Sbjct 997 TTTCAGTGGAGGCACTTTGGTGCCAGGTATACAAACATGCATAATGACTATACTGGCCAA 938 Query 40950 GGAATGGATCA-ATTACAGTGCGTTATAGATACGATTAAATCCGATCCCGATAGCCGACG 41008 ||| | ||||| || || ||||| | | ||| || |||| ||| |||| Sbjct 937 GGAGTTGATCAGCTTTTAG-ATGTTATCAACAAGATAAAGCATAATCCTGATGATAGACG 879 Query 41009 TATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTGTCA 41068 || || | | || ||||| ||| | || | | ||||||||| | ||||| ||||| Sbjct 878 GATCATTCTCTCTGCATGGAATCCAGCAGATCTTAAATTGATGGCACTTCCACCCTGTCA 819 Query 41069 TTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATC 41128 ||| ||||| || || ||||| || | || |||||| || |||| |||| Sbjct 818 CATGTCTGCGCAGTTCTATGTAGCAAATGGGGAGTTATCGTGTCAAATGAATCAGCGATC 759 Query 41129 AGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATAT 41188 | ||| ||||| || || || || || ||||| || |||||| || || || | || Sbjct 758 TGCTGATATGGGCCTGGGTGTGCCATTCAACATTGCATCTTATGCCCTCCTGACATGCAT 699 Query 41189 GATTGCACA 41197 |||||| || Sbjct 698 GATTGCTCA 690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397094352177295