Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq46009 118 1e-21 seq20510 118 1e-21 >seq46009 Length=1074 Score = 118 bits (130), Expect = 1e-21 Identities = 363/557 (65%), Gaps = 7/557 (1%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| |||||||| |||| || || |||||||||||||| |||||| Sbjct 590 GCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTGAGAATGTCAGACCT 531 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| || || | ||| || | ||| | || || ||||| || ||||| || || Sbjct 530 GGCATTAGTCCTCTCTTTTTAAGCCAGAATATGGCACAGAAGCTTCCTGAGAAAAATATC 471 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAA-GGAGCGAGACTTTGCATCAAA 122837 || || ||||| ||||| ||| ||| | || || || | || | ||| | ||| || Sbjct 470 CCTTCAACACATGCAAAACCAACAAGCCTCTCCGCAAATGAAGTGGAACTGTTAATCCAA 411 Query 122838 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 122897 | ||| |||||||| |||||| | ||| ||| || | | ||| || || | || Sbjct 410 C----TCAATGCCCATTCAGCCTTCCTTGCAACACAAGGAAGATTTTCAATTGCATTGAA 355 Query 122898 TAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTC 122957 || | | ||| || | ||| ||||| ||| | || | || ||| | || Sbjct 354 CAATTTATGCTTCTCGACTGAATCTTTAATATATGTCTCCAACAGCAAACTATACATCTC 295 Query 122958 GCCATGAACCATTTCATTATGGCAT-TGATATGCGTAGAATGAGCGCGCTTCGCTTATCT 123016 ||||| | || | || || ||| | ||||||||| || || || || | Sbjct 294 AGAATGAATATTCTCGAT-TGCTATCTGAAACCCGTAGAATGCCCGAGCCTCCGGGATTT 236 Query 123017 GAACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAA 123076 |||| |||| | ||| | | | |||||| ||||| |||||||| || |||| Sbjct 235 GAACGTCATTCAGAAACCTTGCAGCCAAATTCTCCAAAACGATTCCATCAGATGTTGCAA 176 Query 123077 AGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTCGT 123136 | || || |||| || |||||| | ||| || || || ||| ||| | | Sbjct 175 AAAAAGCAAGGACGTGTGATATGAAGTGCTTCTCGGAGTCTGACAAGGTTGCCCAATGAT 116 Query 123137 CAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCAATTGCTCATTTGAGCCTTTTTAT 123196 | ||| | ||| | ||| |||||||| || ||||| || || ||||||||| | Sbjct 115 GTACATCATAGGAGAGATCTACTTCTTCGGCGGTCCAGAAACTGGCTTCAGCCTTTTTGT 56 Query 123197 AGAGTTCCCAGAGTTGT 123213 | | |||||||||||| Sbjct 55 ACATCTCCCAGAGTTGT 39 >seq20510 Length=2578 Score = 118 bits (130), Expect = 1e-21 Identities = 305/461 (66%), Gaps = 8/461 (2%) Strand=Plus/Plus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 |||||| || ||| | | || || || ||||| || | || ||||| | | ||||| Sbjct 1236 ATCAAGAATGTCCGCCCTGTTGGTTGCTGCAATGACAATGATTCCAGTATTACCCTCAAA 1295 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT 11601 |||||||| || || | | ||| |||| || ||||| || |||||||| || Sbjct 1296 TCCATCCATTTCTGTCAAAAGTTGGTTAAGGGTCTGTTCCCTTTCATCATTCCCTCC--- 1352 Query 11602 ACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 |||| ||||||| |||||| | ||||| |||||||| || |||| || |||||||| Sbjct 1353 ACCAATTCCAGCACCCCGTTGCCTCCCCACAGCATCAATTTCGTCAACAAAAACAATACA 1412 Query 11659 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAAC 11718 || ||| || ||| | | || | ||| ||||| | ||||| | |||||| Sbjct 1413 AGGAGCATTCTCTTTGGCCTTCTTGAATAAATCACGAACTCGGGAAGCACCAATACCAAC 1472 Query 11719 AAACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCG 11777 ||||||||| ||||| | | ||||| | || || || || ||| | |||||| | Sbjct 1473 AAACATCTCAACAAACTCAGAACCAGAG-ATTGAGAAAAACGGAACACCAGCTTCACCAG 1531 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTC 11837 | || || ||| | || ||||| || || || || ||| | ||||| | ||| Sbjct 1532 CAATAGCCTTGGCTAATAGAGTCTTCCCAGTCCCCGGGGGACCAACAAGAAGAACTCCTT 1591 Query 11838 GGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCT 11897 || || || ||| | || | ||||| || | || ||||| ||||| | || Sbjct 1592 TCGGTATGCGAGCTCCAATAGCAGTGAACCTCTCAGGCTTTTTTAGAAACTCCACTACCT 1651 Query 11898 CTTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCA 11938 | ||| || | ||||| | || | ||| |||||||| Sbjct 1652 CCACAAAATCCTGCTTGGCTTCATCTACCCCAGCAACATCA 1692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627445896986400