Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq17518 123 3e-23 seq17517 123 3e-23 seq25475 104 3e-17 seq20510 104 3e-17 seq46009 102 1e-16 >seq17518 Length=2997 Score = 123 bits (136), Expect = 3e-23 Identities = 379/574 (66%), Gaps = 19/574 (3%) Strand=Plus/Minus Query 118710 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 118769 || ||||| || || |||||||| | ||||| | |||||||| || || || Sbjct 1618 GCAATTGATGCAAGGTTACACACGGCAGTCTCTGTTGGACTTGTGTACTCAATTATCTCA 1559 Query 118770 GTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGAT--TTGACTTTG-TGTTA 118826 ||||||| |||||| |||||| ||||| ||| | |||| | ||| ||| | || Sbjct 1558 GTGCACAGGTTTGATGACTTAATTGTGCC-AAGAT--TTTGCTGGTTGCTTTTCCTATTG 1502 Query 118827 CACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCC 118886 || |||||||| |||||||||| || | || || || | || ||||| | ||| || Sbjct 1501 CAAGCATCCTTAAAAAGCATGTAAGGATTTCCAGTTTCTATCTGTGACTTCAAAATTGCA 1442 Query 118887 TTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCC--CTCTTCCTCGTACTTTG 118944 ||||| | ||| | ||| || ||| || ||||| || |||| | Sbjct 1441 AACCAGAGACTTTGTGCTTGAACAACCTTCTTTGCTTTTCCAGCTCTT--TCATACTGGG 1384 Query 118945 TGTAGAGGGCTTCAAACTCTTCACCC--ACGGCCTCTGAGAGCCCTGGTGCCTTATCTGG 119002 |||| || ||| | ||||||||| || | |||| | || || |||| || || Sbjct 1383 TGTACAGATTCTCATATTCTTCACCCCAACAG--TCTGCCAAACCAGGGGCCTCATTGGG 1326 Query 119003 GCAGAAGAGAGACCATTGACCACC-CTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCC 119061 ||| || || ||||| | |||| |||| ||| | | ||| || || || || | || Sbjct 1325 GCAAAACAGGGACCAATCACCATTGCTCCG-AACTCTTTCCATAAAAAGATCAGGCACCC 1267 Query 119062 AGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACT 119121 | || || | || | ||| ||| || |||||| | || || || | ||||| Sbjct 1266 AAAGGGCATAAAATAAATCTCGAGCACGCTGTTCTTCCTTTCCGTGGTTTATTTTCAACT 1207 Query 119122 CCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTAC 119181 |||| || || | | ||| || ||||| ||||||| ||| || || | | || || | Sbjct 1206 CCAAGAATTCAAATACATCAGCATGCCATGGTTCCAAGTATACAGCAAAAGCACCTTTTC 1147 Query 119182 GA---CGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAA 119238 | || |||| | ||||| | |||||| | || || ||||| |||||||||| Sbjct 1146 TCTTGCCTCCTCCCTGATCAACATATCGGGCAGTGTCATTGAACACACGCAGCATTGGAA 1087 Query 119239 TGATACCATCGGATTGGCCATTTGTCCCCCGAAT 119272 ||||||||| || |||||||| || ||||| Sbjct 1086 TGATACCATTAGACGTCCCATTTGTTCCACGAAT 1053 >seq17517 Length=2996 Score = 123 bits (136), Expect = 3e-23 Identities = 379/574 (66%), Gaps = 19/574 (3%) Strand=Plus/Minus Query 118710 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 118769 || ||||| || || |||||||| | ||||| | |||||||| || || || Sbjct 1617 GCAATTGATGCAAGGTTACACACGGCAGTCTCTGTTGGACTTGTGTACTCAATTATCTCA 1558 Query 118770 GTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGAT--TTGACTTTG-TGTTA 118826 ||||||| |||||| |||||| ||||| ||| | |||| | ||| ||| | || Sbjct 1557 GTGCACAGGTTTGATGACTTAATTGTGCC-AAGAT--TTTGCTGGTTGCTTTTCCTATTG 1501 Query 118827 CACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCC 118886 || |||||||| |||||||||| || | || || || | || ||||| | ||| || Sbjct 1500 CAAGCATCCTTAAAAAGCATGTAAGGATTTCCAGTTTCTATCTGTGACTTCAAAATTGCA 1441 Query 118887 TTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCC--CTCTTCCTCGTACTTTG 118944 ||||| | ||| | ||| || ||| || ||||| || |||| | Sbjct 1440 AACCAGAGACTTTGTGCTTGAACAACCTTCTTTGCTTTTCCAGCTCTT--TCATACTGGG 1383 Query 118945 TGTAGAGGGCTTCAAACTCTTCACCC--ACGGCCTCTGAGAGCCCTGGTGCCTTATCTGG 119002 |||| || ||| | ||||||||| || | |||| | || || |||| || || Sbjct 1382 TGTACAGATTCTCATATTCTTCACCCCAACAG--TCTGCCAAACCAGGGGCCTCATTGGG 1325 Query 119003 GCAGAAGAGAGACCATTGACCACC-CTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCC 119061 ||| || || ||||| | |||| |||| ||| | | ||| || || || || | || Sbjct 1324 GCAAAACAGGGACCAATCACCATTGCTCCG-AACTCTTTCCATAAAAAGATCAGGCACCC 1266 Query 119062 AGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACT 119121 | || || | || | ||| ||| || |||||| | || || || | ||||| Sbjct 1265 AAAGGGCATAAAATAAATCTCGAGCACGCTGTTCTTCCTTTCCGTGGTTTATTTTCAACT 1206 Query 119122 CCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTAC 119181 |||| || || | | ||| || ||||| ||||||| ||| || || | | || || | Sbjct 1205 CCAAGAATTCAAATACATCAGCATGCCATGGTTCCAAGTATACAGCAAAAGCACCTTTTC 1146 Query 119182 GA---CGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAA 119238 | || |||| | ||||| | |||||| | || || ||||| |||||||||| Sbjct 1145 TCTTGCCTCCTCCCTGATCAACATATCGGGCAGTGTCATTGAACACACGCAGCATTGGAA 1086 Query 119239 TGATACCATCGGATTGGCCATTTGTCCCCCGAAT 119272 ||||||||| || |||||||| || ||||| Sbjct 1085 TGATACCATTAGACGTCCCATTTGTTCCACGAAT 1052 >seq25475 Length=2349 Score = 104 bits (114), Expect = 3e-17 Identities = 180/261 (69%), Gaps = 3/261 (1%) Strand=Plus/Plus Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087 || ||||| ||||| || || || || || || || || | |||||||| | ||| Sbjct 1548 TGAAGACCTTCGTCGCGTGAAATAAGCTCGTTTGAAAAAGTTAATCCTGGCATTAAACCG 1607 Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147 || || || | ||||||||||||||| || || || || || || || || || || Sbjct 1608 CGTTTTTTGAGCCAGAAAATCGCACAGAAACTACCTGAAAAAAATATACCTTCAACGCAA 1667 Query 130148 GCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCC 130207 || || || | | | |||||| || | ||| | ||| | ||| ||||||||| Sbjct 1668 GCAAATGCTACAATCCTCTCAGCGAATGTATCAGAC---GAATCGATCCATTTCATCGCC 1724 Query 130208 CACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTT 130267 || | |||||||||| | ||||| || | |||| ||||| | ||| | ||||| Sbjct 1725 CATTCCGCCTTTTTCGCAATACATGGAATCGTCTCAATCGCGTGAAACAAACGATTCTTC 1784 Query 130268 TCTGATGGATCTTTGATGTAC 130288 |||| || ||||||||| ||| Sbjct 1785 TCTGCTGAATCTTTGATATAC 1805 >seq20510 Length=2578 Score = 104 bits (114), Expect = 3e-17 Identities = 219/321 (68%), Gaps = 12/321 (4%) Strand=Plus/Plus Query 14113 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAA 14172 ||| || || || ||||||| ||| || || | ||||| |||||||| || ||||| Sbjct 1254 GTTGGTTGCTGCAATGACAATGATTCCAGTATTACCCTCAAATCCATCCATTTCTGTCAA 1313 Query 14173 GAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA---CCCGCACTGCG 14229 ||||| || | ||| ||||| | |||||||||| | |||| || |||| || Sbjct 1314 AAGTTGGTTAAGGGTCTGTTCCCTTTCATCATTCCCTCC---ACCAATTCCAGCACCCCG 1370 Query 14230 TTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGC 14289 |||| | || || || |||||||| || | ||||| ||||| || ||| || ||| Sbjct 1371 TTGCCTCCCCACAGCATCAATTTCGTCAACAAAAACAATACAAGGAGCATTCTCTTTGGC 1430 Query 14290 AACTTCA--AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAA 14347 |||| || | ||| || |||| ||||| | ||| ||||||||||| ||||| Sbjct 1431 --CTTCTTGAATAAATCACGAACTCGGGAAGCACCAATACCAACAAACATCTCAACAAAC 1488 Query 14348 TTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAG 14406 | | | | | |||| || || || || || |||||| || || || ||| | Sbjct 1489 TCAGAACCAG-AGATTGAGAAAAACGGAACACCAGCTTCACCAGCAATAGCCTTGGCTAA 1547 Query 14407 GAGGGTCTTCCCCGTCCCTGG 14427 || |||||||| ||||| || Sbjct 1548 TAGAGTCTTCCCAGTCCCCGG 1568 >seq46009 Length=1074 Score = 102 bits (112), Expect = 1e-16 Identities = 132/181 (73%), Gaps = 1/181 (1%) Strand=Plus/Minus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| ||||||||||| | ||||| |||||||| ||||| ||||||| Sbjct 590 GCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTGAGAATGTCAGACCT 531 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| || || | ||| || | |||||| || ||||| || || ||||| || ||| Sbjct 530 GGCATTAGTCCTCTCTTTTTAAGCCAGAATATGGCACAGAAGCTTCCTGAGAAAAATATC 471 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA-GGAGCGGGACTTTGTATCAAA 130194 || || ||||| || || ||| || | ||| ||||| | || || ||| | ||| || Sbjct 470 CCTTCAACACATGCAAAACCAACAAGCCTCTCCGCAAATGAAGTGGAACTGTTAATCCAA 411 Query 130195 C 130195 | Sbjct 410 C 410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617858053080040