Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq20510 136 5e-27 seq46009 132 6e-26 seq25475 125 8e-24 seq49566 104 3e-17 seq17518 89.7 6e-13 seq17517 89.7 6e-13 >seq20510 Length=2578 Score = 136 bits (150), Expect = 5e-27 Identities = 311/462 (67%), Gaps = 12/462 (3%) Strand=Plus/Plus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 |||||| || || | | || || || || ||||||| || || || | | ||||| Sbjct 1236 ATCAAGAATGTCCGCCCTGTTGGTTGCTGCAATGACAATGATTCCAGTATTACCCTCAAA 1295 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 |||||||| ||||||||||||||||||| || ||||||| |||||||||| || Sbjct 1296 TCCATCCATTTCTGTCAAAAGTTGGTTAAGGGTCTGTTCCCTTTCATCATTCCCT---CC 1352 Query 9676 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 |||| ||||||| |||||| | ||||| |||||||| || |||| || || || || Sbjct 1353 ACCAATTCCAGCACCCCGTTGCCTCCCCACAGCATCAATTTCGTCAACAAAAACAATACA 1412 Query 9733 TGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCA 9790 || ||| || || |||| || | ||| || || || || || | |||| Sbjct 1413 AGGAGCATTCTCTTTGGC--CTTCTTGAATAAATCACGAACTCGGGAAGCACCAATACCA 1470 Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9849 ||||||||||| ||||| | | | | | |||| || || || ||| || |||||| Sbjct 1471 ACAAACATCTCAACAAACTCAGAACCAG-AGATTGAGAAAAACGGAACACCAGCTTCACC 1529 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 ||||| || ||| | |||||||| || || || || ||| | || || | || Sbjct 1530 AGCAATAGCCTTGGCTAATAGAGTCTTCCCAGTCCCCGGGGGACCAACAAGAAGAACTCC 1589 Query 9910 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 9969 | || || || ||| | || | | |||||||| | || ||||| ||||| | Sbjct 1590 TTTCGGTATGCGAGCTCCAATAGCAGTGAACCTCTCAGGCTTTTTTAGAAACTCCACTAC 1649 Query 9970 TTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 10011 || | || || | ||||| | || | ||| ||||||| Sbjct 1650 CTCCACAAAATCCTGCTTGGCTTCATCTACCCCAGCAACATC 1691 >seq46009 Length=1074 Score = 132 bits (146), Expect = 6e-26 Identities = 452/692 (65%), Gaps = 13/692 (2%) Strand=Plus/Plus Query 94401 ACACCTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAATTGGACTGCTGAAGAGGTAGA 94460 ||| |||||||| | || || |||||| || ||| ||||| || ||||| ||||| Sbjct 39 ACAACTCTGGGAGATGTACAAAAAGGCTGAAGCCAGTTTCTGGACCGCCGAAGAAGTAGA 98 Query 94461 TCTCTCAAAGGATTTGGACGATTGGAAGACTCTAAATGAAAATGAAAAGAAATTCATAAA 94520 |||||| | ||| | | ||||| || | || || ||| | |||||| Sbjct 99 TCTCTCCTATGATGTACATCATTGGGCAACCTTGTCAGACTCCGAGAAGCACTTCATATC 158 Query 94521 ATACATCCTGGCATTCTTTGCTGGATCCGATGGAATTGTTTTTGAGAATATCAATAACAA 94580 | || |||| || || ||||| ||| |||||||| ||||| |||||| | | ||| Sbjct 159 ACACGTCCTTGCTTTTTTTGCAACATCTGATGGAATCGTTTTGGAGAATTTGGCTG-CAA 217 Query 94581 CTTTGCTGA-TGAGGTGCAATCCTCTGAAGCGAGATCCTTCTATGCGTATCAGTGTCATA 94639 || |||| ||| || ||| | | || || | | ||||| | || |||| | | Sbjct 218 GGTTTCTGAATGACGTTCAAATCCCGGAGGCTCGGGCATTCTACGGGTTTCAGA-TAGCA 276 Query 94640 AT-GAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGT 94698 || || | | ||| |||| || ||| || | || | |||||||| ||| Sbjct 277 ATCGAGAATATTCATTCTGAGATGTATAGTTTGCTGTTGGAGACATATATTAAAGATTCA 336 Query 94699 GCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCG 94758 | |||||| | | | || | || || ||| |||| ||| || || ||| || Sbjct 337 GTCGAGAAGCATAAATTGTTCAATGCAATTGAAAATCTTCCTTGTGTTGCAAGGAAGGCT 396 Query 94759 GATTGGGCTATGAAGTGGTTTGATACAAAGTCGCG-TTCCTTTGCTGAGCGACTCTTCGC 94817 || ||||| ||| ||| ||| | ||| | ||| ||||| ||| | || | | Sbjct 397 GAATGGGCATTGA----GTTGGATTAACAGTTCCACTTCATTTGCGGAGAGGCTTGTTGG 452 Query 94818 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 94877 ||||| |||||||| || || || ||||| || |||||| || || | ||||| || Sbjct 453 TTTTGCATGTGTTGAAGGGATATTTTTCTCAGGAAGCTTCTGTGCCATATTCTGGCTTAA 512 Query 94878 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||| |||| || ||||||||||| ||||| || || || |||||| | |||||||| Sbjct 513 AAAGAGAGGACTAATGCCAGGTCTGACATTCTCAAATGAACTAATCTCTAGAGACGAGGG 572 Query 94938 ACTCCACCAAGAGTTTGCGGTGGA-ACTTTTCAAATTATTGCGTATTAAACCA-ACGACT 94995 || ||| || ||||| || | || | || || || | | || | | || || Sbjct 573 TCTTCACTGTGATTTTGC-TTGCATGCTATACAGCTTGTTACTGAGAAAGCTAGACTAC- 630 Query 94996 GAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAAGGATTCATATTGGAT 95055 ||| ||||| |||||| | ||||| ||||| ||||||| | || | | ||| Sbjct 631 GAGCGGGTTCATAATATTGTACACGAAGCTGTTGAAATTGAGACCGAGTTTGTCTGTGAT 690 Query 95056 GCCCTTCCATGCGCTCTCATCGGTATGAATTC 95087 || || || || ||| | || || ||||| || Sbjct 691 GCACTCCCTTGTGCTTTGATTGGCATGAACTC 722 >seq25475 Length=2349 Score = 125 bits (138), Expect = 8e-24 Identities = 372/566 (66%), Gaps = 11/566 (2%) Strand=Plus/Minus Query 94683 GTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTG 94742 |||||| || ||| || |||||||| | | ||| | || || | || |||| || Sbjct 1805 GTATATCAAAGATTCAGCAGAGAAGAATCGTTTGTTTCACGCGATTGAGACGATTCCATG 1746 Query 94743 TATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGC 94802 |||| || || ||||| ||||| ||||| ||| | ||| | ||| | | || || Sbjct 1745 TATTGCGAAAAAGGCGGAATGGGCGATGAAATGGATCGATTC---GTCTGATACATTCGC 1689 Query 94803 TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGC 94862 |||| | | | |||||||| || ||||| ||||| || || || ||| ||||| || Sbjct 1688 TGAGAGGATTGTAGCATTTGCTTGCGTTGAAGGTATATTTTTTTCAGGTAGTTTCTGTGC 1629 Query 94863 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 |||| |||||||| || || ||| | |||||||| | || || ||||||||||| Sbjct 1628 GATTTTCTGGCTCAAAAAACGCGGTTTAATGCCAGGATTAACTTTTTCAAACGAGCTTAT 1569 Query 94923 CTCTCGTGACGAGGGACTCCACCAAGAGTTTGC--GGTGGAACTTTTCAAATTATTGCGT 94980 || || ||||| || || || || || || | | | |||| | |||||| Sbjct 1568 TTCACGCGACGAAGGTCTTCATTGCGATTTCGCTTGTTTG--CTTTACTCATTATTAAAA 1511 Query 94981 ATTAAAC-CAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAA 95039 | |||| || || ||| | || | ||||| || || |||||||| |||| Sbjct 1510 AAGAAACTCAGTGA-AGAGCGCGTGCAGACGATTGTGCGTGACGCGGTTGAGATCGAGAG 1452 Query 95040 AGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAAATGTC 95099 | || | | || || ||||| ||||| | | || ||||| ||| ||| Sbjct 1451 GGAGTTTGTGTGCGACGCGCTTCCTTGCGCGTTGGTTGGGATGAACGGTGATTTGATGAG 1392 Query 95100 TGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGG-GTGCCTCCAATTT 95158 | |||||||||||||| ||||||| |||||| | || | ||| ||| |||| Sbjct 1391 TACGTATATTGAGTATGTTGCTGATAGGTTGTTGGGGGAGCTTGGGTGTG-GGAAGATTT 1333 Query 95159 GGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACT 95218 || | |||||| ||||| | ||||| ||| || | |||||||| |||| Sbjct 1332 ATAATGTGACGAATCCGTTTGATTGGATGGATCTGATTTCGCTTCAGGGGAAGACCAACT 1273 Query 95219 TCTTCGAAAAGAGGGTTGGGGACTAT 95244 | || || ||| | ||||| || ||| Sbjct 1272 TTTTTGAGAAGCGCGTTGGAGAGTAT 1247 >seq49566 Length=2637 Score = 104 bits (114), Expect = 3e-17 Identities = 152/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| | || || | ||| | ||| |||||| | ||| | |||||| || || Sbjct 1174 ATCAAACCTTCCAGGTCTAAGCAATGCGGAATCAAGAACATCGGGTCTATTCGTAGCAGC 1233 Query 9586 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9645 | |||| || ||||| | | | ||| ||||||||||| |||||||| || ||||| Sbjct 1234 CAAAACAATAACACCTGAATTACCAGAAAATCCATCCATCTCAGTCAAAAGCTGATTAAT 1293 Query 9646 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACG 9703 ||| || ||||| ||||||||| | || ||| ||||| | | || | || || Sbjct 1294 AGTCTGCTCCCGCTCATCATTCCC--GCCACCCATTCCAGCTCCTCTCTGTCTCCCAACC 1351 Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGT 9736 ||||||||||||||||| || || ||||| ||| Sbjct 1352 GCATCAATCTCATCAATAAACACAATGCAAGGT 1384 >seq17518 Length=2997 Score = 89.7 bits (98), Expect = 6e-13 Identities = 199/293 (68%), Gaps = 7/293 (2%) Strand=Plus/Plus Query 104507 ATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCC 104566 ||||| || |||||||| || ||||||| ||||||||||| || || || || | | Sbjct 1053 ATTCGTGGAACAAATGGGACGTCTAATGGTATCATTCCAATGCTGCGTGTGTTCAATGAC 1112 Query 104567 ACAGCGCGCTATGTAAATCA---AGCTGGGCGTCGAAAGGGATCTATCGCAGTCTATCTT 104623 || || || ||||| |||| || || |||| || || | || || || | Sbjct 1113 ACTGCCCGATATGTTGATCAGGGAGGAGGCAAGAGAAAAGGTGCTTTTGCTGTATACTTG 1172 Query 104624 GAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAG 104683 || |||||||| || ||| | | || ||| | |||||| | ||||| || | || Sbjct 1173 GAACCATGGCATGCTGATGTATTTGAATTCTTGGAGTTGAAAATAAACCACGGAAAGGAA 1232 Query 104684 GAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAG 104742 || || |||| || ||| | || | || || ||| | || ||||| || ||| | || Sbjct 1233 GAACAGC-GTGCTCGAGATTTATTTTATGCCCTTTGGGTGCCTGATCTTTTTATGGAAAG 1291 Query 104743 AGTTGAGGAG-AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGT 104794 |||| |||| | ||| ||||||| || ||||| || | |||| |||||| Sbjct 1292 AGTT-CGGAGCAATGGTGATTGGTCCCTGTTTTGCCCCAATGAGGCCCCTGGT 1343 >seq17517 Length=2996 Score = 89.7 bits (98), Expect = 6e-13 Identities = 199/293 (68%), Gaps = 7/293 (2%) Strand=Plus/Plus Query 104507 ATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCC 104566 ||||| || |||||||| || ||||||| ||||||||||| || || || || | | Sbjct 1052 ATTCGTGGAACAAATGGGACGTCTAATGGTATCATTCCAATGCTGCGTGTGTTCAATGAC 1111 Query 104567 ACAGCGCGCTATGTAAATCA---AGCTGGGCGTCGAAAGGGATCTATCGCAGTCTATCTT 104623 || || || ||||| |||| || || |||| || || | || || || | Sbjct 1112 ACTGCCCGATATGTTGATCAGGGAGGAGGCAAGAGAAAAGGTGCTTTTGCTGTATACTTG 1171 Query 104624 GAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAG 104683 || |||||||| || ||| | | || ||| | |||||| | ||||| || | || Sbjct 1172 GAACCATGGCATGCTGATGTATTTGAATTCTTGGAGTTGAAAATAAACCACGGAAAGGAA 1231 Query 104684 GAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAG 104742 || || |||| || ||| | || | || || ||| | || ||||| || ||| | || Sbjct 1232 GAACAGC-GTGCTCGAGATTTATTTTATGCCCTTTGGGTGCCTGATCTTTTTATGGAAAG 1290 Query 104743 AGTTGAGGAG-AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGT 104794 |||| |||| | ||| ||||||| || ||||| || | |||| |||||| Sbjct 1291 AGTT-CGGAGCAATGGTGATTGGTCCCTGTTTTGCCCCAATGAGGCCCCTGGT 1342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582716479149160