Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq9379 87.8 8e-13 seq9378 87.8 8e-13 seq9377 87.8 8e-13 seq9376 87.8 8e-13 >seq9379 Length=2098 Score = 87.8 bits (96), Expect = 8e-13 Identities = 210/309 (68%), Gaps = 19/309 (6%) Strand=Plus/Plus Query 64970 CCATCATCATCCAAATACTTCAAAATGG----CATCATCCTCTTTTGGAAATATAGAACG 65025 ||||| |||| |||||| ||||| | | |||||||||| | | || | | | || Sbjct 1420 CCATCCTCATTCAAATA-TTCAAGAAGTTTATCATCATCCTCAT---GGAAGAGACATCG 1475 Query 65026 AGTTATTTTATTCAATTGAGTATAAATATATCTTTCGGATGCGTGGTCTTGTCCA----- 65080 ||| | | | | | ||| || || ||||| | ||| ||||||| ||| Sbjct 1476 AGTAACCGGACTTAGCTCAGTGTAGATGTATCTGGCACTTGCATGGTCTTTACCACCCAA 1535 Query 65081 GTTCGTCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATA 65140 ||| || || ||||| ||||||||||| | | | ||| |||||||| || | | Sbjct 1536 GTTA--CGAGTACCAAATTGACCATTTGGTTTGAGAAGATTGATATTGTTGCTGCCCACA 1593 Query 65141 AAATTCTGAGCCATTCCGATAATTGCTGC-ATTTAAACTCGCTTCACCGTGATGATATCC 65199 |||| ||| |||||||| ||||||| ||| | | ||| |||||| || || || | Sbjct 1594 AAATCCTGTGCCATTCCAATAATTG-TGCTAGCAAGACTTTGTTCACCATGGTGGTAAGC 1652 Query 65200 TGAATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGT-TAAATTCT 65258 || || ||||| ||||| || |||| || ||||| || |||| | |||| || || | Sbjct 1653 AGAGTGCTCAGACACATAACCGATAAACTGGGCAACCTTAATTT-CTTTGTACAACTTTT 1711 Query 65259 TTTTAAATG 65267 | ||||||| Sbjct 1712 TCTTAAATG 1720 >seq9378 Length=3911 Score = 87.8 bits (96), Expect = 8e-13 Identities = 210/309 (68%), Gaps = 19/309 (6%) Strand=Plus/Plus Query 64970 CCATCATCATCCAAATACTTCAAAATGG----CATCATCCTCTTTTGGAAATATAGAACG 65025 ||||| |||| |||||| ||||| | | |||||||||| | | || | | | || Sbjct 1420 CCATCCTCATTCAAATA-TTCAAGAAGTTTATCATCATCCTCAT---GGAAGAGACATCG 1475 Query 65026 AGTTATTTTATTCAATTGAGTATAAATATATCTTTCGGATGCGTGGTCTTGTCCA----- 65080 ||| | | | | | ||| || || ||||| | ||| ||||||| ||| Sbjct 1476 AGTAACCGGACTTAGCTCAGTGTAGATGTATCTGGCACTTGCATGGTCTTTACCACCCAA 1535 Query 65081 GTTCGTCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATA 65140 ||| || || ||||| ||||||||||| | | | ||| |||||||| || | | Sbjct 1536 GTTA--CGAGTACCAAATTGACCATTTGGTTTGAGAAGATTGATATTGTTGCTGCCCACA 1593 Query 65141 AAATTCTGAGCCATTCCGATAATTGCTGC-ATTTAAACTCGCTTCACCGTGATGATATCC 65199 |||| ||| |||||||| ||||||| ||| | | ||| |||||| || || || | Sbjct 1594 AAATCCTGTGCCATTCCAATAATTG-TGCTAGCAAGACTTTGTTCACCATGGTGGTAAGC 1652 Query 65200 TGAATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGT-TAAATTCT 65258 || || ||||| ||||| || |||| || ||||| || |||| | |||| || || | Sbjct 1653 AGAGTGCTCAGACACATAACCGATAAACTGGGCAACCTTAATTT-CTTTGTACAACTTTT 1711 Query 65259 TTTTAAATG 65267 | ||||||| Sbjct 1712 TCTTAAATG 1720 >seq9377 Length=3936 Score = 87.8 bits (96), Expect = 8e-13 Identities = 210/309 (68%), Gaps = 19/309 (6%) Strand=Plus/Plus Query 64970 CCATCATCATCCAAATACTTCAAAATGG----CATCATCCTCTTTTGGAAATATAGAACG 65025 ||||| |||| |||||| ||||| | | |||||||||| | | || | | | || Sbjct 1445 CCATCCTCATTCAAATA-TTCAAGAAGTTTATCATCATCCTCAT---GGAAGAGACATCG 1500 Query 65026 AGTTATTTTATTCAATTGAGTATAAATATATCTTTCGGATGCGTGGTCTTGTCCA----- 65080 ||| | | | | | ||| || || ||||| | ||| ||||||| ||| Sbjct 1501 AGTAACCGGACTTAGCTCAGTGTAGATGTATCTGGCACTTGCATGGTCTTTACCACCCAA 1560 Query 65081 GTTCGTCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATA 65140 ||| || || ||||| ||||||||||| | | | ||| |||||||| || | | Sbjct 1561 GTTA--CGAGTACCAAATTGACCATTTGGTTTGAGAAGATTGATATTGTTGCTGCCCACA 1618 Query 65141 AAATTCTGAGCCATTCCGATAATTGCTGC-ATTTAAACTCGCTTCACCGTGATGATATCC 65199 |||| ||| |||||||| ||||||| ||| | | ||| |||||| || || || | Sbjct 1619 AAATCCTGTGCCATTCCAATAATTG-TGCTAGCAAGACTTTGTTCACCATGGTGGTAAGC 1677 Query 65200 TGAATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGT-TAAATTCT 65258 || || ||||| ||||| || |||| || ||||| || |||| | |||| || || | Sbjct 1678 AGAGTGCTCAGACACATAACCGATAAACTGGGCAACCTTAATTT-CTTTGTACAACTTTT 1736 Query 65259 TTTTAAATG 65267 | ||||||| Sbjct 1737 TCTTAAATG 1745 >seq9376 Length=2123 Score = 87.8 bits (96), Expect = 8e-13 Identities = 210/309 (68%), Gaps = 19/309 (6%) Strand=Plus/Plus Query 64970 CCATCATCATCCAAATACTTCAAAATGG----CATCATCCTCTTTTGGAAATATAGAACG 65025 ||||| |||| |||||| ||||| | | |||||||||| | | || | | | || Sbjct 1445 CCATCCTCATTCAAATA-TTCAAGAAGTTTATCATCATCCTCAT---GGAAGAGACATCG 1500 Query 65026 AGTTATTTTATTCAATTGAGTATAAATATATCTTTCGGATGCGTGGTCTTGTCCA----- 65080 ||| | | | | | ||| || || ||||| | ||| ||||||| ||| Sbjct 1501 AGTAACCGGACTTAGCTCAGTGTAGATGTATCTGGCACTTGCATGGTCTTTACCACCCAA 1560 Query 65081 GTTCGTCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATA 65140 ||| || || ||||| ||||||||||| | | | ||| |||||||| || | | Sbjct 1561 GTTA--CGAGTACCAAATTGACCATTTGGTTTGAGAAGATTGATATTGTTGCTGCCCACA 1618 Query 65141 AAATTCTGAGCCATTCCGATAATTGCTGC-ATTTAAACTCGCTTCACCGTGATGATATCC 65199 |||| ||| |||||||| ||||||| ||| | | ||| |||||| || || || | Sbjct 1619 AAATCCTGTGCCATTCCAATAATTG-TGCTAGCAAGACTTTGTTCACCATGGTGGTAAGC 1677 Query 65200 TGAATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGT-TAAATTCT 65258 || || ||||| ||||| || |||| || ||||| || |||| | |||| || || | Sbjct 1678 AGAGTGCTCAGACACATAACCGATAAACTGGGCAACCTTAATTT-CTTTGTACAACTTTT 1736 Query 65259 TTTTAAATG 65267 | ||||||| Sbjct 1737 TCTTAAATG 1745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235465553221350