Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq25475 120 3e-22 seq25476 93.3 5e-14 >seq25475 Length=2349 Score = 120 bits (132), Expect = 3e-22 Identities = 287/424 (68%), Gaps = 14/424 (3%) Strand=Plus/Minus Query 59703 GTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTT 59762 ||||| |||||||| || || || ||||| || |||| ||| | | | | || Sbjct 1963 GTCCTTGCCTTCTTTGCCGCCTCCGACGGAATCGTCTTGGAGAATCTCGCCGGAAGATTC 1904 Query 59763 TCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAA-CG 59820 || || |||| || | ||||| || | ||||||| | ||| ||| ||| || Sbjct 1903 ATGAAAGAAATCCAAATCTCAGAGGCGCGTGCCTTCTACGGATTCCAGATCG--CAATCG 1846 Query 59821 AGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAG 59880 || |||||| || |||| ||| || || | |||| || |||| ||| | | || Sbjct 1845 AGAATATCCATTCAGAGATGTATTCTCTTCTCCTCGAGGCGTATATCAAAGATTCAGCAG 1786 Query 59881 AGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAA 59939 ||||| | || |||| | || || |||||| | || | | | | |||| || ||| Sbjct 1785 AGAAGAATCGTTTGTTTCACGCGATTGAGACGATTCCATGTATTGCGA-AAAAGGCGGAA 1727 Query 59940 TGGGCCATGCAGTGGAT-GAGTC--CTGGAGCAT-CATTTGCACAACGTCTCATAGCTTT 59995 ||||| ||| | ||||| || || ||| || |||| || | | | |||| || Sbjct 1726 TGGGCGATGAAATGGATCGATTCGTCTG----ATACATTCGCTGAGAGGATTGTAGCATT 1671 Query 59996 TGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAA 60055 ||| ||||| ||||| || || || || || |||||||| ||||||||||||||||| Sbjct 1670 TGCTTGCGTTGAAGGTATATTTTTTTCAGGTAGTTTCTGTGCGATTTTCTGGCTCAAAAA 1611 Query 60056 GCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCT 60115 || || | ||||| || | | ||| || |||||||| ||||| || ||||| || || Sbjct 1610 ACGCGGTTTAATGCCAGGATTAACTTTTTCAAACGAGCTTATTTCACGCGACGAAGGTCT 1551 Query 60116 CCAT 60119 ||| Sbjct 1550 TCAT 1547 >seq25476 Length=346 Score = 93.3 bits (102), Expect = 5e-14 Identities = 192/280 (69%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 59819 CGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGA 59878 |||| |||||| ||||||| ||| ||| | ||||| | || |||| ||| Sbjct 277 CGAGAATATCCATTCCGAGATGTATAGTCTCCTTATCGAAACGTATATCAACGATAACAC 218 Query 59879 AGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCA--GTTAAACAAAAAGC 59935 |||||| | || |||| | ||||| || || | || ||| | ||| ||||| Sbjct 217 CGAGAAGAATCGTTTGTTTCACGCCATTGATACAATTCCTTGCATCGCTAAG---AAAGC 161 Query 59936 AGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTT 59994 |||||||| || | ||||| || || | | ||||| || || | || | |||| Sbjct 160 TGAATGGGCGTTGAAATGGATCGATTCGTCC-GATTCATTCGCTGAAAGAATCGTTGCTT 102 Query 59995 TTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAA 60054 | || || || ||||| || || |||||||| |||||||| ||||||||||| |||| Sbjct 101 TCGCTTGTGTTGAAGGTATATTTTTCTCTGGAAGTTTCTGTGCAATTTTCTGGCTTAAAA 42 Query 60055 AGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCT 60094 |||| || | ||||| || | | ||| || |||||||| Sbjct 41 AGCGCGGTTTAATGCCTGGATTAACTTTTTCAAACGAGCT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548012896086960