Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq22702 127 2e-24 seq22701 118 9e-22 >seq22702 Length=2386 Score = 127 bits (140), Expect = 2e-24 Identities = 235/342 (69%), Gaps = 2/342 (1%) Strand=Plus/Plus Query 6619 ATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCC 6678 |||||| |||||| | || || || || ||| ||||||||||| ||||| || | || Sbjct 689 ATGAGCAATCATGCATGTCAGGAGGGCATAAGATGCAATGTTGAATGGCACACCCAGGCC 748 Query 6679 CATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTG 6738 ||| || | ||||| |||| | || || || | ||||||||| || || ||||| || Sbjct 749 CATATCAGCAGATCGCTGATTCATTTGACACGATAACTCCCCATTTGCTACATAGAACTG 808 Query 6739 -GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGC 6797 ||||| |||| || || || || ||||||| ||||| || ||||| || Sbjct 809 CGCAGA-CATGTGACAGGGTGGAAGTGCCATCAATTTAAGATCTGCTGGATTCCATGCAG 867 Query 6798 ACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCT 6857 | | | ||||| ||| |||||||| || |||| | ||| ||| || | |||| Sbjct 868 AGAGAATGATCCGTCTATCATCAGGATTATGCTTTATCTTGTTGATAACATCTAAAAGCT 927 Query 6858 GGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTC 6917 | || |||| || || | |||||| | | |||| || |||||||| | Sbjct 928 GATCAACTCCTTGGCCAGTATAGTCATTATGCATGTTTGTATACCTGGCACCAAAGTGCC 987 Query 6918 TCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCC 6959 ||||||| ||||| || || || || ||||| |||||||||| Sbjct 988 TCCACTGAAACCCATAAACAGGTCCTAAGTCACCCTCCTCCC 1029 Score = 127 bits (140), Expect = 2e-24 Identities = 235/342 (69%), Gaps = 2/342 (1%) Strand=Plus/Minus Query 34386 GGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGT 34445 |||||||||| ||||| || || || || ||||| |||||||| |||||||| || || Sbjct 1029 GGGAGGAGGGTGACTTAGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGTGCCAGGT 970 Query 34446 ATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCG 34505 || | | |||||| | || || |||| || ||||| | || ||| Sbjct 969 ATACAAACATGCATAATGACTATACTGGCCAAGGAGTTGATCAGCTTTTAGATGTTATCA 910 Query 34506 ACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGG 34565 ||| | |||| || |||||||| ||| ||||| | | | || ||||| || | Sbjct 909 ACAAGATAAAGCATAATCCTGATGATAGACGGATCATTCTCTCTGCATGGAATCCAGCAG 850 Query 34566 ATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGTCGCGAAT 34624 |||| ||||||| || || || || |||| ||||| || ||||| || || ||| Sbjct 849 ATCTTAAATTGATGGCACTTCCACCCTGTCACATG-TCTGCGCAGTTCTATGTAGCAAAT 791 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 |||||| | || || || | |||| ||||| | || ||||| | || ||||| ||| Sbjct 790 GGGGAGTTATCGTGTCAAATGAATCAGCGATCTGCTGATATGGGCCTGGGTGTGCCATTC 731 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCAT 34726 |||||||| ||| || || || || | |||||| |||||| Sbjct 730 AACATTGCATCTTATGCCCTCCTGACATGCATGATTGCTCAT 689 >seq22701 Length=2303 Score = 118 bits (130), Expect = 9e-22 Identities = 234/344 (68%), Gaps = 2/344 (1%) Strand=Plus/Plus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 |||||||| |||||| | || | || || ||| ||||| || |||||||| || | Sbjct 604 ACATGAGCAATCATGCATGTCAAGAGCGCATAAGATGCAATATTAAACGGCACACCCAGG 663 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 |||||||| | ||||||||||| | || || || | ||||||||| || || ||||| Sbjct 664 CCCATGTCGGCAGATCGTTGATACATTTGACACGATAACTCCCCATTTGCCACATAGAAC 723 Query 6737 TG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGC 6795 || ||| | ||||||| || || || ||||| | ||||| || ||||| || Sbjct 724 TGTGCA-AACATGTGGCATGGTGGAAGAGCCATTAATTTAAGATCAGATGGATTCCATGC 782 Query 6796 GCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAG 6855 | | | ||| | || ||||| || || |||| | | | || || | || Sbjct 783 TGAGAGGATGATGCGTCGATCATCGGGATTATGCTTTATCTTATTAATAACATCTAAAAG 842 Query 6856 CTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTG 6915 ||| || ||| || || || |||||| | | | ||||| || |||||||| Sbjct 843 CTGATCAAATCCTTGGCCGGAGTAGTCCTCATGCATGTTAGTATACTTTGCACCAAAGTG 902 Query 6916 TCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCC 6959 |||||||| ||||| || || || || ||||| |||||||||| Sbjct 903 CCTCCACTGAAACCCATAAACAGGTCCTAAGTCACCCTCCTCCC 946 Score = 118 bits (130), Expect = 9e-22 Identities = 234/344 (68%), Gaps = 2/344 (1%) Strand=Plus/Minus Query 34386 GGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGT 34445 |||||||||| ||||| || || || || ||||| |||||||| |||||||| || ||| Sbjct 946 GGGAGGAGGGTGACTTAGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGTGCAAAGT 887 Query 34446 ATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCG 34505 || | | | |||||| || || || ||| || ||||| | || || Sbjct 886 ATACTAACATGCATGAGGACTACTCCGGCCAAGGATTTGATCAGCTTTTAGATGTTATTA 827 Query 34506 ACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGG 34565 | | | |||| || || ||||| || | ||| | | | || ||||| || | Sbjct 826 ATAAGATAAAGCATAATCCCGATGATCGACGCATCATCCTCTCAGCATGGAATCCATCTG 767 Query 34566 ATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGTCGCGAAT 34624 |||| | ||||| || || || ||||||| | ||| || ||||| || || ||| Sbjct 766 ATCTTAAATTAATGGCTCTTCCACCATGCCACATGTT-TGCACAGTTCTATGTGGCAAAT 708 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 |||||| | || || || | ||||||||||| | |||||||| | || |||||||| Sbjct 707 GGGGAGTTATCGTGTCAAATGTATCAACGATCTGCCGACATGGGCCTGGGTGTGCCGTTT 648 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGT 34728 || ||||| ||| || || | || | |||||| |||||||| Sbjct 647 AATATTGCATCTTATGCGCTCTTGACATGCATGATTGCTCATGT 604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447844064718480