Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq56143 102 7e-17 seq56145 98.7 9e-16 seq56144 98.7 9e-16 seq2804 98.7 9e-16 seq2799 87.8 2e-12 seq33732 86.0 5e-12 >seq56143 Length=1408 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| | | ||| | |||||||| || || |||||| || ||||||||||| ||| Sbjct 752 CCTCCACGCAGGCGAAGAACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATCCGCA 811 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || |||| |||| || || || || |||||||| || | ||||| || || | || Sbjct 812 AGAGTTCTCCCGTCCTCCAGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGGA 871 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | | ||||||||| ||| ||| || | ||| | | | || || || || || Sbjct 872 ATTCCTTCTTTGTCCTGGATCTTCGCCTTCA-CGTTGTCGATTGTGTCCGAGGATTCAAC 930 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| ||||||| || |||||||| || ||||||||||| Sbjct 931 CTCCAGTGTGATGGTTTTTCCAGTTAGCGTTTTGACGAAGATTTGCAT 978 >seq56145 Length=1576 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| | | ||| | |||||||| || || |||||| || ||||||||||| ||| Sbjct 752 CCTCCACGCAGGCGAAGAACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATCCGCA 811 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || |||| |||| || || || || |||||||| || | ||||| || || | || Sbjct 812 AGAGTTCTCCCGTCCTCCAGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGGA 871 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | | ||||||||| ||| ||| || | ||| | | | || || || || || Sbjct 872 ATTCCTTCTTTGTCCTGGATCTTCGCCTTCA-CGTTGTCGATTGTGTCCGAGGATTCAAC 930 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| ||||||| || || ||||| || ||||||||||| Sbjct 931 CTCCAGTGTGATGGTTTTTCCGGTTAGGGTTTTCACGAAGATTTGCAT 978 >seq56144 Length=1637 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| | | ||| | |||||||| || || |||||| || ||||||||||| ||| Sbjct 752 CCTCCACGCAGGCGAAGAACCAAATGGAGAGTAGACTCTTTCTGGATATTATAATCCGCA 811 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || |||| |||| || || || || |||||||| || | ||||| || || | || Sbjct 812 AGAGTTCTCCCGTCCTCCAGTTGCTTTCCCGCAAAGATCAATCGCTGTTGATCCGGAGGA 871 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | | ||||||||| ||| ||| || | ||| | | | || || || || || Sbjct 872 ATTCCTTCTTTGTCCTGGATCTTCGCCTTCA-CGTTGTCGATTGTGTCCGAGGATTCAAC 930 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| ||||||| || || ||||| || ||||||||||| Sbjct 931 CTCCAGTGTGATGGTTTTTCCGGTTAGGGTTTTCACGAAGATTTGCAT 978 >seq2804 Length=712 Score = 98.7 bits (108), Expect = 9e-16 Identities = 154/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||| | ||| || || |||||| || || || ||||| || | |||| | Sbjct 699 CGCAACACAAGATGGAGAGTTGACTCTTTCTGAATGTTGTAATCTGCTAAAGTTCTGCCA 640 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || |||||||||||||| ||||| ||||| | ||| ||||||| || | || |||||| Sbjct 639 TCCTCAAGCTGTTTGCCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTA 580 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTG 39246 ||| || || ||||| | | | ||||| ||| ||| || || | ||| Sbjct 579 TCCTGAATCTTGGCTTTGACATTGTCAATGGTATCAGAGCT---CTCGACCTCAAGGGTG 523 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 || | ||||| || || ||||| ||||||||||||||| Sbjct 522 ATGGTCTTTCCAGTGAGAGTTTTCACAAAGATTTGCATC 484 >seq2799 Length=391 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || || |||| || | ||| || ||| || || || |||||||||||||| Sbjct 294 CCTCCCCTCAAACGTAGGACAAGATGAAGGGTGGATTCCTTCTGAATATTATAATCGGCC 235 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGG 39176 || ||||| | || || |||||||| || ||||| ||||| | |||||| | ||||||| Sbjct 234 AGAGTTCGGCCATCTTCGAGCTGTTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGTGGG 175 Query 39177 CACGCTCTCTTTGTC 39191 | | ||||||||| Sbjct 174 -ATACCCTCTTTGTC 161 >seq33732 Length=802 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||| | ||| || ||| ||||| || || || |||||||| | |||| | Sbjct 693 CGCAACACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAATCGGCCAAAGTTCTGCCA 634 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||||||||| ||||| || || | ||| ||||| | || | || ||||||| Sbjct 633 TCTTCGAGCTGTTTGCCAGCAAAGATGAGCCTCTGTTGGTCCGGTGGAATGCCCTCTTTG 574 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| ||| || |||| | | | || || |||||| || | || || Sbjct 573 TCCTGGATCTTGGCCTTGACATTGTCTATGGTGTCTGAACTCTCCACCTCTAGTGTAATG 514 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||| || || ||||| |||||||||||||| Sbjct 513 GTCTTTCCTGTAAGGGTTTTGACAAAGATTTGCAT 479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429154753639667