Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2805 131 1e-25 seq56145 125 5e-24 seq56144 125 5e-24 seq2804 125 5e-24 seq56143 122 6e-23 seq48430 100 2e-16 seq33732 93.3 3e-14 seq34025 89.7 3e-13 >seq2805 Length=580 Score = 131 bits (144), Expect = 1e-25 Identities = 151/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| ||||||||||| |||||||| || || || ||||||||||||||||| Sbjct 254 AAGATGCAAATTTTCGTTAAGACCCTCACTGGCAAGACCATCACTCTCGAAGTTGAGAGT 313 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || | || ||| |||| | || | || ||||| ||||| | ||||| || Sbjct 314 TCAGATACCATAGACAATGTTAAGGCCAAGA-TTCAAGACAAGGAAGGGATCCCGCCCGA 372 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||||||| | | || ||||| |||||||| || ||||| | | ||||| | |||||| Sbjct 373 TCAACAGAGGCTCATCTTTGCTGGCAAACAGCTCGAAGATGGCAGAACTTTGGCCGATTA 432 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || ||||| ||||| Sbjct 433 CAACATCCAGAAAGAATCCAC 453 >seq56145 Length=1576 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| |||||||| || |||||||| ||||| || || ||||| ||| || Sbjct 978 ATGCAAATCTTCGTGAAAACCCTAACCGGAAAAACCATCACACTGGAGGTTGAATCCTCG 919 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||||||||| | || || |||||| Sbjct 918 GACACAATCGACAACGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCGGATCAA 859 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || ||||| || || |||||||| |||| | ||| | | ||||| || Sbjct 858 CAGCGATTGATCTTTGCGGGAAAGCAACTGGAGGACGGGAGAACTCTTGCGGATTATAAT 799 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || |||||||| || | ||||| ||| | | |||| ||||| Sbjct 798 ATCCAGAAAGAGTCTACTCTCCATTTGGTTCTTCGCCTGCGTGGAGG 752 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | ||||| || || || ||| | || || || || Sbjct 750 ATGCAGATTTTTGTCAAGACTTTAACGGGTAAGACAATTACTTTGGAGGTGGAGAGTTCG 691 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| | ||| | || | || || || ||||| |||| || ||||| Sbjct 690 GATACTATTGATAATGTGAAAGCCAAGA-TTCAGGATAAGGAAGGGATACCACCTGATCA 632 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || ||||| || |||||||| ||||| | ||||||| | | ||||| || Sbjct 631 ACAGCGTCTTATCTTTGCTGGTAAACAACTTGAAGATGGACGCACTCTTGCTGATTATAA 572 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || || ||| | || | ||| | ||| | || || || Sbjct 571 TATTCAGAAGGAATCTACACTTCACCTTGTTCTCAGGCTCCGTGGTGG 524 >seq56144 Length=1637 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| |||||||| || |||||||| ||||| || || ||||| ||| || Sbjct 978 ATGCAAATCTTCGTGAAAACCCTAACCGGAAAAACCATCACACTGGAGGTTGAATCCTCG 919 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||||||||| | || || |||||| Sbjct 918 GACACAATCGACAACGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCGGATCAA 859 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || ||||| || || |||||||| |||| | ||| | | ||||| || Sbjct 858 CAGCGATTGATCTTTGCGGGAAAGCAACTGGAGGACGGGAGAACTCTTGCGGATTATAAT 799 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || |||||||| || | ||||| ||| | | |||| ||||| Sbjct 798 ATCCAGAAAGAGTCTACTCTCCATTTGGTTCTTCGCCTGCGTGGAGG 752 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || |||||||| || || ||||| || || || || ||||| ||| | Sbjct 1206 ATGCAAATCTTTGTGAAAACCCTAACCGGTAAAACCATAACCCTAGAGGTTGAATCCTCC 1147 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | ||| || ||| ||||| || || | || || ||||| Sbjct 1146 GACACCATCGACAACGTGAAAGCTAAGATTCAAGACAAGGAGGGAATTCCTCCCGATCAG 1087 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || |||||||| ||||| ||||||||| || || ||| ||| |||||| Sbjct 1086 CAGCGGTTGATCTTTGCCGGAAAACAGTTGGAAGACGGCCGAACCCTAGCCGACTACAAC 1027 Query 23791 ATACAAAAAGAGTCCAC 23807 ||||| || || || || Sbjct 1026 ATACAGAAGGAATCAAC 1010 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | ||||| || || || ||| | || || || || Sbjct 750 ATGCAGATTTTTGTCAAGACTTTAACGGGTAAGACAATTACTTTGGAGGTGGAGAGTTCG 691 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| | ||| | || | || || || ||||| |||| || ||||| Sbjct 690 GATACTATTGATAATGTGAAAGCCAAGA-TTCAGGATAAGGAAGGGATACCACCTGATCA 632 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || ||||| || |||||||| ||||| | ||||||| | | ||||| || Sbjct 631 ACAGCGTCTTATCTTTGCTGGTAAACAACTTGAAGATGGACGCACTCTTGCTGATTATAA 572 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || || ||| | || | ||| | ||| | || || || Sbjct 571 TATTCAGAAGGAATCTACACTTCACCTTGTTCTCAGGCTCCGTGGTGG 524 >seq2804 Length=712 Score = 125 bits (138), Expect = 5e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| ||||||||||| |||||||| || || || ||||||||||||||||| Sbjct 254 AAGATGCAAATTTTCGTTAAGACCCTCACTGGCAAGACCATCACTCTCGAAGTTGAGAGT 313 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || | || ||| |||| | || | || ||||| ||||| | || || || Sbjct 314 TCAGATACCATAGACAATGTTAAGGCCAAGA-TTCAAGACAAGGAAGGGATCCCACCTGA 372 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || |||||| | || ||||||||||||||||| || || | || || | | ||||| Sbjct 373 CCAGCAGCGTCTCATTTTTGCCGGCAAACAACTAGAGGATGGCCGTACCCTTGCTGATTA 432 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||||||| || || || ||| | ||||| || Sbjct 433 CAACATACAGAAGGAATCTACACTCCATTTGGT 465 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| ||||| ||||| || ||||| || || || || | | Sbjct 485 ATGCAAATCTTTGTGAAAACTCTCACTGGAAAGACCATCACCCTTGAGGTCGAGAGCTCT 544 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | ||| | || | || || ||||| || | || || || || Sbjct 545 GATACCATTGACAATGTCAAAGCCAAGA-TTCAGGATAAAGAGGGCATTCCACCCGACCA 603 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || ||||| |||||||| || || || | | ||||||| |||||||| Sbjct 604 ACAGAGGCTTATCTTTGCTGGCAAACAGCTTGAGGATGGCAGAACTTTAGCAGATTACAA 663 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 664 CATTCAGAAAGAGTCAAC 681 >seq56143 Length=1408 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||| || || |||||||| ||||| || || ||||| ||| || Sbjct 978 ATGCAAATCTTCGTCAAAACGCTAACTGGAAAAACCATCACACTGGAGGTTGAATCCTCG 919 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||||||||| | || || |||||| Sbjct 918 GACACAATCGACAACGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCGGATCAA 859 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || ||||| || || |||||||| |||| | ||| | | ||||| || Sbjct 858 CAGCGATTGATCTTTGCGGGAAAGCAACTGGAGGACGGGAGAACTCTTGCGGATTATAAT 799 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || |||||||| || | ||||| ||| | | |||| ||||| Sbjct 798 ATCCAGAAAGAGTCTACTCTCCATTTGGTTCTTCGCCTGCGTGGAGG 752 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | ||||| || || || ||| | || || || || Sbjct 750 ATGCAGATTTTTGTCAAGACTTTAACGGGTAAGACAATTACTTTGGAGGTGGAGAGTTCG 691 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| | ||| | || | || || || ||||| |||| || ||||| Sbjct 690 GATACTATTGATAATGTGAAAGCCAAGA-TTCAGGATAAGGAAGGGATACCACCTGATCA 632 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || ||||| || |||||||| ||||| | ||||||| | | ||||| || Sbjct 631 ACAGCGTCTTATCTTTGCTGGTAAACAACTTGAAGATGGACGCACTCTTGCTGATTATAA 572 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || || ||| | || | ||| | ||| | || || || Sbjct 571 TATTCAGAAGGAATCTACACTTCACCTTGTTCTCAGGCTCCGTGGTGG 524 >seq48430 Length=787 Score = 100 bits (110), Expect = 2e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 23638 GGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAACAAAA 23696 || ||||| ||||| ||||| || || || ||||| | || ||| | || || || Sbjct 2 GGGAAAACCATCACCCTCGAGGTCGAGAGCAGCGACACCATCGACAATGTCAAGACCAAG 61 Query 23697 AATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACA 23756 | || |||||||||||| | || || ||||| |||||||| || || ||||| || || Sbjct 62 A-TTCAAGACAAAGAAGGTATCCCTCCGGATCAGCAGCGTTTGATTTTCGCCGGTAAGCA 120 Query 23757 ACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTT 23816 || ||||| | |||||| || | ||||||||| || || || || || || | ||| | Sbjct 121 GCTTGAAGATGGACGCACCTTGGCCGATTACAATATCCAGAAGGAATCTACTCTTCATCT 180 Query 23817 AGTTTTAAGGTTGCGAGGAGGA 23838 ||| | ||| | || || ||| Sbjct 181 TGTTCTCAGGCTTCGTGGTGGA 202 >seq33732 Length=802 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| || || || || ||||| || || || || |||||||| |||||||| Sbjct 248 AAGATGCAAATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAAGTTGAGAGT 307 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || | || ||| |||| | || | || ||||| || || | || ||||| Sbjct 308 TCAGATACCATAGACAATGTTAAGTCCAAGA-TTCAAGACAAGGAGGGGATCCCTCCAGA 366 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || ||||| || || ||||| || || | || || | | ||||| Sbjct 367 TCAGCAGCGTCTCATTTTTGCTGGTAAGCAACTAGAGGATGGGCGTACCCTTGCTGATTA 426 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGT 23819 |||||| || || || ||||| | |||||||| Sbjct 427 CAACATCCAGAAGGAATCCACCCTTCATTTAGT 459 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || |||||||| || ||||| || || || || || || || | Sbjct 479 ATGCAAATCTTTGTCAAAACCCTTACAGGAAAGACCATTACACTAGAGGTGGAGAGTTCA 538 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | |||||||| || | || || || || Sbjct 539 GACACCATAGACAATGTCAAGGCCAAGA-TCCAGGACAAAGAGGGCATTCCACCGGACCA 597 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || ||||| |||||||| || ||||| | | ||||| | ||||||||| Sbjct 598 ACAGAGGCTCATCTTTGCTGGCAAACAGCTCGAAGATGGCAGAACTTTGGCCGATTACAA 657 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||| ||||| Sbjct 658 CATCCAGAAAGAATCCAC 675 >seq34025 Length=456 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || ||||| || || || | || || || | Sbjct 133 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATTACCTTAGAGGTAGAAAGTTCA 192 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || |||||| ||||| || || | || |||||||| Sbjct 193 GACACCATTGATAACGTGAAGGCAAAAATACAAGACAAGGAGGGAATCCCACCAGATCAG 252 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| |||||||| || ||||| | | ||||| | |||||||||| Sbjct 253 CAGAGGTTGATCTTTGCTGGCAAACAGCTCGAAGATGGCAGAACTTTGGCCGATTACAAC 312 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||| ||||| Sbjct 313 ATCCAGAAAGAATCCAC 329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337702042846772