Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq46009 150 2e-31 seq25475 150 2e-31 >seq46009 Length=1074 Score = 150 bits (166), Expect = 2e-31 Identities = 363/546 (66%), Gaps = 5/546 (1%) Strand=Plus/Minus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || ||||||||||| || | ||| |||||||| || ||||| || || || || | Sbjct 593 CAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 534 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 || ||||||| ||||||||||||||||| ||||| || || || || || ||| Sbjct 533 CCTGGCATTAGTCCTCTCTTTTTAAGCCAGAATATGGCACAGAAGCTTCCTGAGAAAAAT 474 Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTA 4727 || ||||| || ||||| | || | | | | || || ||| || ||| Sbjct 473 ATCCCTTCAACACATGCAAAACCAACAAGCCTCTCCGCAAATGAAGTGGAACTG---TTA 417 Query 4728 ATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTA 4787 ||||| | |||||||| | ||| || | ||| || |||| | | || || || Sbjct 416 ATCCAACTCAATGCCCATTCAGCCTTCCTTGCAACACAAGGAAGATTTTCAATTGCATTG 357 Query 4788 AATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATT 4847 || |||||| || || | || |||| |||||| || || | || | |||||||| Sbjct 356 AACAATTTATGCTTCTCGACTGAATCTTTAATATATGTCTCCAACAGCAAACTATACATC 297 Query 4848 TCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACT 4907 |||||||| ||||| || || || |||||||| ||||| || | ||| || | | | Sbjct 296 TCAGAATGAATATTCTCGATTGCTATCTGAAACCCGTAGAATGCCCGAGCCTCCGGGATT 237 Query 4908 TGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCA 4967 ||||| || || ||| ||| | | || || || || || || ||| | |||| Sbjct 236 TGAACGTCATTCAGAAACCTTGCAGCCAAATTCTCCAAAACGATTCCATCAGATGTTGCA 177 Query 4968 AAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTA-AGTTTTTTCCAGTG 5026 ||||| || | || || ||||| |||| || ||| || || | | || ||| || Sbjct 176 AAAAAAGCAAGGACGTGTGATATGAAGTGCTTCTCG-GAGTCTGACAAGGTTGCCCAATG 118 Query 5027 GGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTT 5086 | | ||| | | | ||| |||||||| | ||||| || ||||| || ||||| Sbjct 117 ATGTACATCATAGGAGAGATCTACTTCTTCGGCGGTCCAGAAACTGGCTTCAGCCTTTTT 58 Query 5087 GTACAT 5092 |||||| Sbjct 57 GTACAT 52 >seq25475 Length=2349 Score = 150 bits (166), Expect = 2e-31 Identities = 411/624 (66%), Gaps = 13/624 (2%) Strand=Plus/Plus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 ||||| || ||||| ||||| | ||||||||| | ||| || ||||| ||||| ||| Sbjct 1530 AAACAAGCGAAATCGCAATGAAGACCTTCGTCGCGTGAAATAAGCTCGTTTGAAAAAGTT 1589 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 ||||| ||||||||||| | ||||| ||||| || || || || || ||||| Sbjct 1590 AATCCTGGCATTAAACCGCGTTTTTTGAGCCAGAAAATCGCACAGAAACTACCTGAAAAA 1649 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGAC-CCGAACG-AGCTGGCTTTGT 4722 ||||| ||||| ||| ||||| ||||| |||| | |||| | | | | | Sbjct 1650 AATATACCTTCAACGCAAGCAAATGCTAC-AATCCTCTCAGCGAATGTATCAGAC----G 1704 Query 4723 CTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAG 4782 | |||||||| | ||||| | || |||||| || || ||||| || | || | Sbjct 1705 AATCGATCCATTTCATCGCCCATTCCGCCTTTTTCGCAATACATGGAATCGTCTCAATCG 1764 Query 4783 CGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTAT 4842 ||| ||| || | | || || || |||| ||||| | || | || || || Sbjct 1765 CGTGAAACAAACGATTCTTCTCTGCTGAATCTTTGATATACGCCTCGAGGAGAAGAGAAT 1824 Query 4843 ACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTG 4902 |||| || ||||| ||||| || || || ||||| |||||||| ||| | || |||| Sbjct 1825 ACATCTCTGAATGGATATTCTCGATTGCGATCTGGAATCCGTAGAAGGCACGCGCCTCTG 1884 Query 4903 TTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGG 4962 | ||| | ||| || |||||| | | | || || || || ||||| || Sbjct 1885 AGATTTGGATTTCTTTCATGAATCTTCCGGCGAGATTCTCCAAGACGATTCCGTCGGAGG 1944 Query 4963 CTGCAAAAAACGCCAAAACATGAGATATAAAGT---ACTGTTCGTCAGGCTTAAGTTTTT 5019 | ||||| || || | ||||| || | ||||| || |||| | | || Sbjct 1945 CGGCAAAGAAGGCAAGGACATGCGAAACAAAGTGGCGCTCACCGTCGG---TGAGGGAGA 2001 Query 5020 TCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCG 5079 ||||||| | ||||| | | ||| |||||||| | ||||| || || ||||| | Sbjct 2002 TCCAGTGCTGGTTATCTTGGGAGAGATCGACTTCTTCGGCGGTCCAGAAAGAGGCTTCGG 2061 Query 5080 CTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGTTGT 5139 |||| |||||||| ||| || | ||| || || || || | ||| || | || Sbjct 2062 CTTTCTTGTACATTTCCCAGATTTTAGGGTATTGGATTGGGAACATGCAGAAACGGTCTG 2121 Query 5140 CGTTAGGTGTAAGAAGCGGTTCTT 5163 |||||| | ||||| ||||||| Sbjct 2122 GGTTAGGGGCGAGAAGGGGTTCTT 2145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426661024766447