Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vicia_20faba_20[genbank_20GCA_5F001375635.1_202015-04-20] 74,659 sequences; 80,362,707 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq46009 172 6e-38 seq25475 98.7 1e-15 >seq46009 Length=1074 Score = 172 bits (190), Expect = 6e-38 Identities = 363/534 (68%), Gaps = 17/534 (3%) Strand=Plus/Minus Query 23509 CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAAT 23568 || ||||||||||| || || || || || ||| || | |||||| || ||||| | Sbjct 593 CAAGCAAAATCACAGTGAAGACCCTCGTCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 534 Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAA 23628 |||||||||| ||||| ||||||| ||| ||||| ||| || ||| || || || Sbjct 533 CCTGGCATTAGTCCTCTCTTTTTAAGCCAGAATATGGCACAGAAGCTTCCTGAGAAAAAT 474 Query 23629 ATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTAC-CAAATGTTGCATTATAATCAGA 23687 || || |||||| ||||| | ||||| | | | | |||||| | | || Sbjct 473 ATCCCTTCAACACATGCAAAACCAACAAGCC-TCTCCGCAAATGAAG---TGGAACTGTT 418 Query 23688 AATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTT 23747 |||||| | || ||| | ||||||| | ||||| || |||||||||| || Sbjct 417 AATCCAACTCAATGCCCATTCAGCCTTCCTTGCAACACAAGGAAGATTTTCAATTGCATT 358 Query 23748 TAAGAGAAAAGTTTTTTCTTC---ATT--ATCTGTTATATATGTATCAATTAGTAAACTA 23802 ||| | ||| | |||| | | |||| | |||||||| || | || |||||| Sbjct 357 -----GAACAATTTATGCTTCTCGACTGAATCTTTAATATATGTCTCCAACAGCAAACTA 303 Query 23803 TACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCA 23862 ||||| |||||||||||||| || || || ||||||||||| || || | ||| || Sbjct 302 TACATCTCAGAATGAATATTCTCGATTGCTATCTGAAACCCGTAGAATGCCCGAGCCTCC 243 Query 23863 GACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTA 23922 | | |||||| ||||| | ||| ||| ||| ||||| || ||| || |||||| Sbjct 242 GGGATTTGAACGTCATTCAGAAACCTTGCAGCCAAATTCTCCAAAACGATTCCATCAGAT 183 Query 23923 GCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGT-TGATAATTTTTT 23981 | ||||| |||||||| || | | ||| || || ||| ||| ||| || || Sbjct 182 GTTGCAAAAAAAGCAAGGACGTGTGATATGAAGTG-CTTCTCGGAGTCTGACAAGGTTGC 124 Query 23982 CCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGC 24035 ||||| || | ||| | || | ||| ||||| || | ||||| ||||| || Sbjct 123 CCAATGATGTACATCATAGGAGAGATCTACTTCTTCGGCGGTCCAGAAACTGGC 70 >seq25475 Length=2349 Score = 98.7 bits (108), Expect = 1e-15 Identities = 288/442 (65%), Gaps = 9/442 (2%) Strand=Plus/Plus Query 23506 AAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTT 23565 ||||| || ||||| ||||| || ||||| || | ||| | || || ||||| ||| Sbjct 1530 AAACAAGCGAAATCGCAATGAAGACCTTCGTCGCGTGAAATAAGCTCGTTTGAAAAAGTT 1589 Query 23566 AATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAG 23625 |||||||||||||| || |||||||| | ||| || || ||| || || ||||| Sbjct 1590 AATCCTGGCATTAAACCGCGTTTTTTGAGCCAGAAAATCGCACAGAAACTACCTGAAAAA 1649 Query 23626 AAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCA 23685 || ||||| ||||| ||||| || |||| | | | ||||| || |||| Sbjct 1650 AATATACCTTCAACGCAAGCAAATGCTACAATCCTCTCAGCGAATGTATCAGACGAATC- 1708 Query 23686 GAAATCCAtttttttGTCCAATTAGCCTTCAATTT---TACACACTCAATTGTTTCAATT 23742 |||||||| | | ||| | ||||| ||| | ||| ||| || ||||| Sbjct 1709 --GATCCATTTCATCGCCCATTCCGCCTT---TTTCGCAATACATGGAATCGTCTCAATC 1763 Query 23743 GCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTA 23802 || | || | | | | || ||| | |||| | ||||| | || | || | | | Sbjct 1764 GCGTGAAACAAACGATTCTTCTCTGCTGAATCTTTGATATACGCCTCGAGGAGAAGAGAA 1823 Query 23803 TACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCA 23862 ||||| || ||||| ||||| || || || ||||| || || || || | || || Sbjct 1824 TACATCTCTGAATGGATATTCTCGATTGCGATCTGGAATCCGTAGAAGGCACGCGCCTCT 1883 Query 23863 GACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTA 23922 || | ||| | || || | |||||| || | ||| || || || || || Sbjct 1884 GAGATTTGGATTTCTTTCATGAATCTTCCGGCGAGATTCTCCAAGACGATTCCGTCGGAG 1943 Query 23923 GCAGCAAAGAAAGCAAGAACAT 23944 || |||||||| ||||| |||| Sbjct 1944 GCGGCAAAGAAGGCAAGGACAT 1965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521001327842600