Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3 134 2e-26 seq1 93.3 5e-14 >seq3 Length=41204908 Score = 134 bits (148), Expect = 2e-26 Identities = 383/581 (66%), Gaps = 12/581 (2%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| ||||| || ||||||||||| | || | ||||||||| || |||||| Sbjct 26200340 CAAGCGAAGTCGCAATGGAGACCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAAGTGAGT 26200399 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG-ATCCAGAAAAGAA 24253 || ||||| ||||| || || || ||||| || ||||| ||||| | ||| || ||||| Sbjct 26200400 CCTGGCATGAGGCCCCGTTTCTTGAGCCAGAAGATGGA-GCAAAAGCTTCCGGAGAAGAA 26200458 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCC--ATAAC-CGGCGCTGTCATG 24310 || || || || |||||||| | || | || | | || ||| | ||| Sbjct 26200459 GATACCCTCGACGCAGGCAAAGGCGACGAGGCGCTCGGCGAAGGACTCGGAGGAGTC--- 26200515 Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 ||||| | ||||| | ||||||||| | || || || || || || || || | Sbjct 26200516 GATCCAGCGGAGGGCCCAGTTGGCCTTCTTGGTGACGCAGGGAATGGTGTCAATGGCGTG 26200575 Query 24371 AAAGAGATAGtttttttCATTAC--TATCTTTAACATATGTATCAATCAAAAGACTATAC 24428 ||||||| | |||| || ||| ||||| | || || || | | || || ||| Sbjct 26200576 AAAGAGACGGGTTTTCTC--TACGGAGTCTTTTATGTAGGTTTCGAGGAGGAGGCTGTAC 26200633 Query 24429 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTA 24488 || || || |||||||| || || || || || || ||||| || | |||||||| Sbjct 26200634 ATCTCGGAGTGAATGTTCTCGATAGCGATCTGGAAGCCGTAAAAGGCGCGAGCCTCGGAG 26200693 Query 24489 ATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCT 24548 | ||| || || | ||| || | || | ||||| || || ||||| ||| Sbjct 26200694 ACCTGGACCTCCTTCATAAAACGGCCGGCAAGGTTTTCTAGTACGATGCCGTCGGAGGCG 26200753 Query 24549 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA 24608 || || || || | ||||| | | |||| ||| | || || | ||||| Sbjct 26200754 GCGAAGAAGGCGAGGACATGGGTGACGAAATGGCGCTCGCCGTCGGTAAGAGTGTTCCAG 26200813 Query 24609 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 24668 | | |||| || | || | ||||| || ||| | ||||| || || || ||||| || Sbjct 26200814 TGACTGATGTCCTGCGAGAGGTCCACCTCCTCCGCCGTCCAGAACGAGGCTTCTGCTTTC 26200873 Query 24669 TTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709 || ||||| | |||||| | | ||||| || || || || Sbjct 26200874 TTGTACATTTCCCAGATTTGGGGGTATTGGATAGGGAACAT 26200914 Score = 116 bits (128), Expect = 4e-21 Identities = 239/353 (68%), Gaps = 2/353 (1%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| |||||||| || || || |||| || | ||||||||| || ||||| Sbjct 34261340 CACGCGAAGTCGCAGTGAAGCCCTTCATCTCGCGAGATGAGTTCGTTGGAGAAGGTGAGA 34261281 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 24253 |||||||| | ||||||||| || ||||||||||| || ||| | | | || || ||||| Sbjct 34261280 CCGGGCATCAAGCCACGCTTCTTGAGCCAAAATATCGA-GCAGAAGCTGCCGGAGAAGAA 34261222 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTAT 24313 ||||| || || || ||||| | || | || | | | || || ||| || Sbjct 34261221 GATTCCCTCAACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGAGTCGGTGGCATCGAT 34261162 Query 24314 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 24373 ||| ||||| | ||||||||| ||||| || || || || | || || Sbjct 34261161 CCAGCGCAAGGCCCATTGGGCCTTCTTGGCGACACAGGGGATGGTATCGACGGCGCGGAA 34261102 Query 24374 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 24433 || | || ||||| | ||||| | || || || | | ||||| ||||| || Sbjct 34261101 CAGGTGATTCTTTTCGGTGGAGTCTTTGATGTAGGTTTCCAAGAGGAGACTGTACATCTC 34261042 Query 24434 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486 || || ||||| || ||||| || || || ||||||||| | |||||||| Sbjct 34261041 GGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAAGCACGAGCCTCGG 34260989 >seq1 Length=42234885 Score = 93.3 bits (102), Expect = 5e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 54175 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 54234 || |||| ||| || ||||| | ||| | ||| || | ||| | || | || |||||| Sbjct 1930113 CCTTTTGCCTCCCCCTTGATCCACGTAACGAGCAGTATCATTGAACACACGCAGCATTGG 1930054 Query 54235 AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 54294 || ||||||||| |||| ||||| || || ||| || || || ||||||||||||| Sbjct 1930053 AACAATACCATTTGATGTCCCATTTGTGCCACGGATGTAACTGCCTGTGGCACGAATATT 1929994 Query 54295 ACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 54354 || || | ||| || || || || ||| || | || || || || || Sbjct 1929993 GTGAACAGAAACACCAATTCCACCGGCTGATTTGCTAATGATAGCACACTCCTTCAAAGT 1929934 Query 54355 ATCATAGATGCCCTCTATACTATCATCCATCATG 54388 ||||| || ||||||||||||||||| ||||| Sbjct 1929933 GTCATATATTCCCTCTATACTATCATCTTTCATG 1929900 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 53923 TTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCC 53982 |||||||||||| | || |||| | ||||| || || |||||| || |||| || Sbjct 1930579 TTCTCTTTCGTACTGAGTGTACAGTTTCTCAAATTCTTCACCCCAACAATCAGCCAAACC 1930520 Query 53983 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 54042 ||| |||||| || || | ||| ||||| | || | || |||| || |||||| Sbjct 1930519 TGGAGATTCATTGGGGCAAAACAAAGACCATTGCCCATTGCTCTGAACTCTTTCCATAAA 1930460 Query 54043 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCT 54078 ||||||||| | ||||||||| ||| | |||||| Sbjct 1930459 GAGATCAGGCACCCAAAGAGCATAAAACAAATCTCT 1930424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593444220690000