Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq5 100 3e-16 seq1 100 3e-16 seq2 98.7 1e-15 seq109 93.3 5e-14 seq4 82.4 9e-11 >seq5 Length=30687117 Score = 100 bits (110), Expect = 3e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| || ||||| || || || || || |||| || |||||||| || ||||| Sbjct 9179499 CTCCTTTTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 9179440 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||| ||| ||| || |||| | Sbjct 9179439 GATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACATT 9179380 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| || ||||| || | |||||||| || ||||| || || || || Sbjct 9179379 ATCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTCCCCGTAAGGGTTTTCAC 9179320 Query 43172 AAAGATTTGCATT 43184 || || |||||| Sbjct 9179319 GAATATCTGCATT 9179307 >seq1 Length=42234885 Score = 100 bits (110), Expect = 3e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| ||||| | ||||||||| | ||| |||||| ||||||||||||||||| Sbjct 37707176 CCGCCTCTCAAACGAAGCACCAAATGGAGGGTGGACTCCTTCTGAATATTGTAATCAGCA 37707235 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || | | || || || || || |||||||| || || | ||||||||| | || Sbjct 37707236 AGGGTTCTTCCATCCTCGAGTTGTTTCCCAGCGAAAATCAGCCTCTGCTGGTCTGGAGGG 37707295 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | || ||| ||||| ||| || || | | | | ||||| ||| || Sbjct 37707296 ATGCCCTCTTTGTCTTGGATCTTGGCCTTTACATTATCAATGGTGTCTGAACTC---TCG 37707352 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | || |||||||| || || | ||||| |||||||||||||| Sbjct 37707353 ACCTCAAGGGTAATGGTTTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 37707402 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || ||||| || | |||||| || | ||| |||||| |||||||||||||| || Sbjct 37712881 CCACCCCTTAACCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAATCGGCA 37712940 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || | | | || || ||||| |||||||| || || || | ||||| || | || Sbjct 37712941 AGGGTTCTCCCATCCTCAAGCTGTTTACCAGCAAAAATCAGCCTTTGCTGATCCGGAGGG 37713000 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | ||| |||||| ||| || |||| | | | ||||| |||||| || Sbjct 37713001 ATACCCTCTTTGTCCTGGATCTTAGCCTTGACATTATCAATGGTGTCAGACGATTCTACT 37713060 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || ||||| ||||| || | || || |||||||| ||||| Sbjct 37713061 TCAAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACAAAGATCTGCAT 37713107 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || ||||| | ||||| || | ||| ||||||||||| ||||||||||| Sbjct 37703214 CCCCCCCTCAAACGAAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGCA 37703273 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || | |||| || || || ||||||||||| || || | |||||| || | || Sbjct 37703274 AGGGTTCTTCCGTCCTCAAGTTGTTTACCAGCGAAAATCAGCCTCTGCTGATCCGGAGGG 37703333 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | || |||||| ||| || || | | | | || ||| |||||||| Sbjct 37703334 ATACCTTCTTTGTCCTGGATCTTAGCCTTCACATTATCAATGGTATCGGAGGATTCCACC 37703393 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTAC 43189 |||| ||||| ||||| || || | || || || ||||||||||| | ||| Sbjct 37703394 TCGAGTGTGATAGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCATCTGTAC 37703446 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||| || |||||||| || ||||| || | || || || |||||||| || || Sbjct 37707440 TCCTTTTGGATGTTGTAATCCGCAAGAGTGCGACCATCCTCGAGTTGCTTACCCGCAAAG 37707499 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || |||| ||||||||| | || | | ||||||||| ||| | |||| || ||| Sbjct 37707500 ATAAGTCTCTGCTGGTCAGGTGGGATACCCTCCTTGTCT-TGAATCTTTGCTTTCACGTT 37707558 Query 43113 GCCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 || | ||||| ||||| || || | |||||||||||||| || | || || || Sbjct 37707559 ATCAATGGTGTCGGAGGATTCAACCTCAAGGGTGATGGTTTTGCCGGTCAAAGTTTTCAC 37707618 Query 43172 AAAGATTTGCAT 43183 || || ||||| Sbjct 37707619 GAATATCTGCAT 37707630 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| ||||| | |||||| |||| || |||||| ||||||||||||||||| Sbjct 37712653 CCACCTCTCAAACGAAGCACCAAGTGCAGGGTTGACTCCTTCTGAATATTGTAATCAGCA 37712712 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || |||| | || || || || ||||||||||| || || | |||||| || | || Sbjct 37712713 AGGGTCCTTCCATCCTCAAGTTGTTTACCAGCGAAAATAAGCCTCTGCTGATCAGGAGGG 37712772 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | | ||| ||||| ||| || |||| | | | || || ||| ||| Sbjct 37712773 ATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTATCAATGGTATCTGAACTC---TCC 37712829 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | || |||||||| || || | ||||||||||| || ||||| Sbjct 37712830 ACCTCCAAGGTTATGGTTTTTCCAGTCAAAGTCTTTACAAAAATCTGCAT 37712879 Score = 95.1 bits (104), Expect = 1e-14 Identities = 168/240 (70%), Gaps = 9/240 (4%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||| || | ||| |||||||||||| ||||||||||| || || || | Sbjct 6126224 ACGGAGCACCAGGTGGAGGGTGGACTCCTTTTGAATGTTGTAATCAGCAAGGGTACGACC 6126283 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || ||||| || ||||| || ||||| || |||||||| | || | | ||||| Sbjct 6126284 ATCCTCAAGCTGTTTGCCAGCAAAAATGAGACGTTGCTGGTCCGGTGGGATTCCTTCCTT 6126343 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCG 43143 ||| ||| | || | ||| | | | | || || |||| || || |||| | Sbjct 6126344 GTCT-TGAATCTTGGCTTTCACATTATCAATGGTATCTGAGCTC---TCTACTTCGAGAG 6126399 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACGCCG-AATACAATG 43202 ||||||| || || || || ||||| || ||||||||||| | ||| | ||||| ||| Sbjct 6126400 TGATGGTCTTACCGGTGAGAGTCTTAACGAAGATTTGCATCTAGACGAGGCAATACGATG 6126459 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | |||||| |||| || | ||| ||| || ||||| ||||||||||| Sbjct 6125529 CCTCCACGAAGACGCAATACCAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGCA 6125588 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||||| | | || || | ||||| ||||| || || | | |||||| || | || Sbjct 6125589 AGAGTCCTCCCATCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGG 6125648 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | | ||||||||| ||||||| |||| | | | || || ||| ||| Sbjct 6125649 ATTCCTTCCTTGTCCTGGATTTTTGCCTTGACGTTATCAATTGTATCTGAGCT---TTCA 6125705 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||| || || || |||| ||||| |||||||| ||||| Sbjct 6125706 ACCTCCAAAGTGATAGTCTTCCCTGTTAAAGTCTTCACAAAGATCTGCAT 6125755 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || | ||| | || | ||| | ||| |||||| ||||| || ||||||||| Sbjct 6125757 CCTCCCCTCAGACGAAGTACAAGATGAAGAGTGGACTCCTTCTGAATGTTATAATCAGCC 6125816 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || |||||||| ||||| || || | | |||||||| | || Sbjct 6125817 AGAGTACGTCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGAGGA 6125876 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | || |||||||||| || || |||| | | | |||||| ||| ||| Sbjct 6125877 ATGCCCTCCTTGTCCTGTATCTTGGCCTTGACATTGTCAATCGTGTCTGAACTC---TCC 6125933 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | || || ||||| || || || ||||| || || || ||||| Sbjct 6125934 ACCTCCAAAGTAATTGTTTTTCCAGTAAGGGTCTTGACGAAAATCTGCAT 6125983 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || || ||||| || ||||| |||| || || | || ||||| ||||| || || ||| Sbjct 6126021 TCTTTCTGAATGTTATAATCTGCCAAGGTTCGGCCATCTTCTAGTTGCTTTCCGGCAAAT 6126080 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 43111 ||||| | ||||||||| | || | | ||||||||| ||| | || | |||| | Sbjct 6126081 ATGAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCT-TGAATCTTGGCCTTGACATT 6126139 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | ||||| ||| ||| || || | |||||||| || || || || ||||| Sbjct 6126140 GTCTATAGTGTCAGAGCT---TTCGACCTCAAGGGTGATGGTCTTTCCGGTGAGGGTCTT 6126196 Query 43169 TACAAAGATTTGCATT 43184 ||||||||||||||| Sbjct 6126197 GACAAAGATTTGCATT 6126212 >seq2 Length=35625406 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| ||||| ||||||||||| || |||| | || || ||||| || || ||||| Sbjct 31176316 TCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCATCCTCCAGCTGTTTTCCGGCGAAG 31176375 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | | ||||||||| | || | | |||||||||| ||| || |||| ||| Sbjct 31176376 ATCAACCTCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGA-CGTT 31176434 Query 43113 G-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | | ||||| |||| || || |||| |||||||| ||||| || || ||||| Sbjct 31176435 GTCGATGGTGTCAGAGCTC---TCAACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTT 31176491 Query 43169 TACAAAGATTTGCAT 43183 |||||||| ||||| Sbjct 31176492 CACAAAGATCTGCAT 31176506 >seq109 Length=622178 Score = 93.3 bits (102), Expect = 5e-14 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| | | ||| | |||| ||| | ||| |||||| || || ||||| ||||| Sbjct 289696 TCCTCCACGGAGACGGAGGACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 289755 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||| || || | || || || ||||| || ||||| || | ||||||||||| | || Sbjct 289756 CAGGGTGCGACCATCCTCCAGTTGCTTCCCGGCGAAGATCAAACGCTGCTGGTCTGGTGG 289815 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCG---CTCGATT 43131 | | ||||||||| ||| |||| | | ||| | | | |||||| ||| | Sbjct 289816 GATCCCTTCCTTGTCC-TGAATTTTGGCCTTTACGTTGTCGATGGTGTCGGAACTC---T 289871 Query 43132 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| |||| || ||||| || || || | ||||| || ||||||||||| Sbjct 289872 CCACCTCGAGAGTTATGGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 289923 >seq4 Length=34671004 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60073 GCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACC 60132 || ||| ||||||||| |||| |||||||||||||||| ||||||||||||||||||| Sbjct 3853816 GCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATACTCACCACTATACTACA 3853757 Query 60133 GAGGATTGAATATATAACTT 60152 | ||| |||| ||| || Sbjct 3853756 ACGACTTGTATATTTAAGTT 3853737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571550453965000