Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 1e-15 seq5 95.1 2e-14 >seq1 Length=42234885 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| ||| || || ||||| || |||||||| || || ||||||||||| | | Sbjct 37702986 CCACCTCGAAGCCTCAAAACCAAGTGCAAAGTAGACTCCTTCTGGATATTATAATCCGCA 37703045 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| || | ||||| |||||||| || | || |||||||| || ||| Sbjct 37703046 AGGGTTCTTCCATCTTCAAGCTGTTTCCCAGCAAAGATAAGCCTCTGCTGATCGGGGGGA 37703105 Query 146171 ATTCCTTCTTTATCTTG 146187 || || || ||||| || Sbjct 37703106 ATACCCTCCTTATCCTG 37703122 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/210 (68%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 ||||| || | ||| ||||| ||| || || || ||||| | ||| ||||| | || || Sbjct 37703232 ACCAAGTGGAGAGTGGATTCCTTTTGA-ATGTTGTAATCAGCAAGGGTTCTTCCGTCCTC 37703290 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||| ||||| ||||||| || |||||||||||||| || |||||||| || || Sbjct 37703291 AAGTTGTTTACCAGCGAAAATCAGCCTCTGCTGATCCGGAGGGATACCTTCTTTGTCCTG 37703350 Query 146188 NNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTT 146247 ||||| || ||| || || |||||||| ||||| Sbjct 37703351 GATCTTAGCCTTCACATTATCAATGGTATCGGAGGATTCCACCTCGAGTGTGATAGTTTT 37703410 Query 146248 ACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || ||||| | ||| |||||||| Sbjct 37703411 TCCGGTCAAAGTTTTCACGAAGATTTGCAT 37703440 Score = 89.7 bits (98), Expect = 8e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| |||| |||||||| | ||| ||||| || || |||||||| | Sbjct 37702756 TTCCACCACGAAGCCTTAGCACCAAATGAAGAGTGGATTCCTTCTGGATGTTATAATCAG 37702815 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||| || | | ||| |||| || || |||||||| || | ||||||||||| || | Sbjct 37702816 CAAGGGTACGCCCATCTTCTAGCTGCTTCCCAGCAAAGATAAGCCTTTGCTGATCTGGTG 37702875 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| || ||||| || || Sbjct 37702876 GAATCCCCTCTTTGTCCTG 37702894 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| ||||| | ||| ||||| | ||| || | ||||| ||||||||||||| ||| Sbjct 37712926 ATATTGTAATCGGCAAGGGTTCTCCCATCCTCAAGCTGTTTACCAGCAAAAATCAGCCTT 37712985 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||||||||| || || ||||| || || Sbjct 37712986 TGCTGATCCGGAGGGATACCCTCTTTGTCCTG 37713017 >seq5 Length=30687117 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| ||||| || || || ||||| || | |||||||| || ||| |||||||| Sbjct 2508630 GTTCCTCCTCTGAGCCTCAAGACCAAGTGAAGGGTAGATTCCTTTTGTATGTTATAATCA 2508571 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||| || | | ||| || | ||| || |||||||||||||| || ||||| || ||| Sbjct 2508570 GCAAGTGTGCGACCATCTTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGA 2508511 Query 146168 GGAATTCCTTCTTTATC 146184 || || ||||| || || Sbjct 2508510 GGGATACCTTCCTTGTC 2508494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743179033760000