Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq25 100 6e-16 seq1 100 6e-16 seq3 86.0 1e-11 >seq25 Length=312266 Score = 100 bits (110), Expect = 6e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 248783 TGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGC 248842 ||||| ||| ||| ||| | || || || || || |||| |||| |||||||| | Sbjct 241690 TGGACAGCGAGATAATCTATGACAGGGACTTCGACTATGATTATTTTGGGTTCAAAACCC 241749 Query 248843 TGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGT 248902 | |||| || || ||| | || || | || ||| | |||||| | || ||||||| Sbjct 241750 TTGAGAGGTCTTACCTCTTAAAGGTTCAAGGGAAGGTTGTGGAAAGGCCGCAACACATGT 241809 Query 248903 TGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGA 248942 ||||| |||| || || ||||||||||||||||||||||| Sbjct 241810 TGATGAGAGTCGCGGTTGGGATTCACAAGGATGACATAGA 241849 >seq1 Length=42234885 Score = 100 bits (110), Expect = 6e-16 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || || || |||| |||| ||||||||| || |||| || || ||| | || || Sbjct 1929536 GACTTTGACTATGATTATTTTGGTTTCAAAACCCTTGAGAGGTCCTACCTCTTAAAGGTT 1929595 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | |||||| | |||||| || || |||||||||||| | || ||||| || ||||| Sbjct 1929596 CAAGGCAAGGTTGTGGAAAGACCACAACACATGTTGATGAGGGTCGCTGTTGGAATTCAT 1929655 Query 248929 AAGGATGACATAGAGAGCGTGC--TCGAGACGTA-CACCGGAATGAGTGAACGCTGGATG 248985 ||||| ||||| || || ||| || | || || |||| | ||| | |||| ||| | Sbjct 1929656 AAGGAAGACATTGA-TGC-TGCTGTCAAAACTTACCACCTG-ATGTCTCAACGGTGGTTC 1929712 Query 248986 ACACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 || ||||| | || || || |||||||| || || Sbjct 1929713 ACTCATGCATCTCCAACTCTTTTCAACGCGGGAAC 1929747 >seq3 Length=41204908 Score = 86.0 bits (94), Expect = 1e-11 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 |||||| |||| | ||||| || ||||||||||| ||||| || ||||||| ||||| Sbjct 26200054 GTACTCCCCCACGCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAAATCAGCTCCAT 26200113 Query 157318 CCACTCGAATGGGTT-GGCGCAGTTGTACACCTTGTCGTACCCCAG 157362 ||| ||||||||||| | || ||||||||||| || |||| || Sbjct 26200114 CCAATCGAATGGGTTCTGTACA-TTGTACACCTTCCCGCACCCAAG 26200158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073252208504000